miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23038 3' -56.1 NC_005178.1 + 16454 0.66 0.579018
Target:  5'- -cGCCGCCAcGcu-GAGUCGCgAUCUa -3'
miRNA:   3'- cuUGGCGGUcCcauCUCAGCGgUAGG- -5'
23038 3' -56.1 NC_005178.1 + 35167 0.66 0.546967
Target:  5'- cGGCCGCCAGcGGcagcucggcggcgagUAGuccggucgggcaccAGUCGCCGguUCCg -3'
miRNA:   3'- cUUGGCGGUC-CC---------------AUC--------------UCAGCGGU--AGG- -5'
23038 3' -56.1 NC_005178.1 + 22657 0.66 0.534953
Target:  5'- uGAUgGCCAGGGU-GuGUCGCUcauGUCg -3'
miRNA:   3'- cUUGgCGGUCCCAuCuCAGCGG---UAGg -5'
23038 3' -56.1 NC_005178.1 + 25926 0.67 0.502693
Target:  5'- cAGCCugGCCAGcGGgaugccacgUGGAugGUUGCCAUCCa -3'
miRNA:   3'- cUUGG--CGGUC-CC---------AUCU--CAGCGGUAGG- -5'
23038 3' -56.1 NC_005178.1 + 28140 0.67 0.471311
Target:  5'- -cGCCcCUAGcuGgcGGGUCGCCAUCCu -3'
miRNA:   3'- cuUGGcGGUCc-CauCUCAGCGGUAGG- -5'
23038 3' -56.1 NC_005178.1 + 18407 0.67 0.471311
Target:  5'- -uGCCGCCAGGcGcuccUGGAccUCGCgGUCCa -3'
miRNA:   3'- cuUGGCGGUCC-C----AUCUc-AGCGgUAGG- -5'
23038 3' -56.1 NC_005178.1 + 22585 0.68 0.45095
Target:  5'- --uCUGCUGGGGUGGGuuauuccuggguGUCGUUGUCCg -3'
miRNA:   3'- cuuGGCGGUCCCAUCU------------CAGCGGUAGG- -5'
23038 3' -56.1 NC_005178.1 + 33041 0.68 0.45095
Target:  5'- uAGCgGCUAucGUAGuuGUCGCCGUCCa -3'
miRNA:   3'- cUUGgCGGUccCAUCu-CAGCGGUAGG- -5'
23038 3' -56.1 NC_005178.1 + 16990 0.69 0.392936
Target:  5'- --uCCGCCAGGGcgcuGUCGuCCAuaUCCg -3'
miRNA:   3'- cuuGGCGGUCCCaucuCAGC-GGU--AGG- -5'
23038 3' -56.1 NC_005178.1 + 28305 0.7 0.348448
Target:  5'- gGAGCUGCCGGGGccgcUGGAGUgGCUg--- -3'
miRNA:   3'- -CUUGGCGGUCCC----AUCUCAgCGGuagg -5'
23038 3' -56.1 NC_005178.1 + 27501 0.7 0.339992
Target:  5'- uGGGCCGCCGuGGUGGAacuuuuGUCGCgCAgcgCCu -3'
miRNA:   3'- -CUUGGCGGUcCCAUCU------CAGCG-GUa--GG- -5'
23038 3' -56.1 NC_005178.1 + 21282 0.71 0.292413
Target:  5'- cGGCCgGCCGGGGagcGGGUuucggUGCCGUCCg -3'
miRNA:   3'- cUUGG-CGGUCCCau-CUCA-----GCGGUAGG- -5'
23038 3' -56.1 NC_005178.1 + 34115 0.73 0.231045
Target:  5'- uGAACUGCUuuucGGGauaccaGGGGUUGCCAUCCc -3'
miRNA:   3'- -CUUGGCGGu---CCCa-----UCUCAGCGGUAGG- -5'
23038 3' -56.1 NC_005178.1 + 18230 1.12 0.000326
Target:  5'- cGAACCGCCAGGGUAGAGUCGCCAUCCu -3'
miRNA:   3'- -CUUGGCGGUCCCAUCUCAGCGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.