Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 16454 | 0.66 | 0.579018 |
Target: 5'- -cGCCGCCAcGcu-GAGUCGCgAUCUa -3' miRNA: 3'- cuUGGCGGUcCcauCUCAGCGgUAGG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 35167 | 0.66 | 0.546967 |
Target: 5'- cGGCCGCCAGcGGcagcucggcggcgagUAGuccggucgggcaccAGUCGCCGguUCCg -3' miRNA: 3'- cUUGGCGGUC-CC---------------AUC--------------UCAGCGGU--AGG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 22657 | 0.66 | 0.534953 |
Target: 5'- uGAUgGCCAGGGU-GuGUCGCUcauGUCg -3' miRNA: 3'- cUUGgCGGUCCCAuCuCAGCGG---UAGg -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 25926 | 0.67 | 0.502693 |
Target: 5'- cAGCCugGCCAGcGGgaugccacgUGGAugGUUGCCAUCCa -3' miRNA: 3'- cUUGG--CGGUC-CC---------AUCU--CAGCGGUAGG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 28140 | 0.67 | 0.471311 |
Target: 5'- -cGCCcCUAGcuGgcGGGUCGCCAUCCu -3' miRNA: 3'- cuUGGcGGUCc-CauCUCAGCGGUAGG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 18407 | 0.67 | 0.471311 |
Target: 5'- -uGCCGCCAGGcGcuccUGGAccUCGCgGUCCa -3' miRNA: 3'- cuUGGCGGUCC-C----AUCUc-AGCGgUAGG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 22585 | 0.68 | 0.45095 |
Target: 5'- --uCUGCUGGGGUGGGuuauuccuggguGUCGUUGUCCg -3' miRNA: 3'- cuuGGCGGUCCCAUCU------------CAGCGGUAGG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 33041 | 0.68 | 0.45095 |
Target: 5'- uAGCgGCUAucGUAGuuGUCGCCGUCCa -3' miRNA: 3'- cUUGgCGGUccCAUCu-CAGCGGUAGG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 16990 | 0.69 | 0.392936 |
Target: 5'- --uCCGCCAGGGcgcuGUCGuCCAuaUCCg -3' miRNA: 3'- cuuGGCGGUCCCaucuCAGC-GGU--AGG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 28305 | 0.7 | 0.348448 |
Target: 5'- gGAGCUGCCGGGGccgcUGGAGUgGCUg--- -3' miRNA: 3'- -CUUGGCGGUCCC----AUCUCAgCGGuagg -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 27501 | 0.7 | 0.339992 |
Target: 5'- uGGGCCGCCGuGGUGGAacuuuuGUCGCgCAgcgCCu -3' miRNA: 3'- -CUUGGCGGUcCCAUCU------CAGCG-GUa--GG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 21282 | 0.71 | 0.292413 |
Target: 5'- cGGCCgGCCGGGGagcGGGUuucggUGCCGUCCg -3' miRNA: 3'- cUUGG-CGGUCCCau-CUCA-----GCGGUAGG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 34115 | 0.73 | 0.231045 |
Target: 5'- uGAACUGCUuuucGGGauaccaGGGGUUGCCAUCCc -3' miRNA: 3'- -CUUGGCGGu---CCCa-----UCUCAGCGGUAGG- -5' |
|||||||
23038 | 3' | -56.1 | NC_005178.1 | + | 18230 | 1.12 | 0.000326 |
Target: 5'- cGAACCGCCAGGGUAGAGUCGCCAUCCu -3' miRNA: 3'- -CUUGGCGGUCCCAUCUCAGCGGUAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home