miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23038 5' -57.7 NC_005178.1 + 28291 0.66 0.422846
Target:  5'- --uGACCGGCGcuGCgggaGCUGCCGgggcCGCUg -3'
miRNA:   3'- uauCUGGUCGC--UGag--CGACGGU----GCGA- -5'
23038 5' -57.7 NC_005178.1 + 31362 0.66 0.404544
Target:  5'- gGUGGACCgcgAGCGGCagcuacuggacaugaCGCUGUUugGCUg -3'
miRNA:   3'- -UAUCUGG---UCGCUGa--------------GCGACGGugCGA- -5'
23038 5' -57.7 NC_005178.1 + 32058 0.67 0.394178
Target:  5'- -cGGcACCcauAGCGGCUucUGCUgGCCGCGCa -3'
miRNA:   3'- uaUC-UGG---UCGCUGA--GCGA-CGGUGCGa -5'
23038 5' -57.7 NC_005178.1 + 12660 0.67 0.394178
Target:  5'- --cGGCCGGCGcGCUgGCgggugGCCugGUUg -3'
miRNA:   3'- uauCUGGUCGC-UGAgCGa----CGGugCGA- -5'
23038 5' -57.7 NC_005178.1 + 16424 0.67 0.375779
Target:  5'- --uGACCuacuggcuGCGgaugcccgccaGCUCGCcGCCACGCUg -3'
miRNA:   3'- uauCUGGu-------CGC-----------UGAGCGaCGGUGCGA- -5'
23038 5' -57.7 NC_005178.1 + 32510 0.67 0.366799
Target:  5'- uGUAGcuCCAGCGGaUCGC-GCCACgGCUg -3'
miRNA:   3'- -UAUCu-GGUCGCUgAGCGaCGGUG-CGA- -5'
23038 5' -57.7 NC_005178.1 + 25882 0.67 0.349288
Target:  5'- -cAGGCCAuGCGGCa-GUUGCCgGCGCa -3'
miRNA:   3'- uaUCUGGU-CGCUGagCGACGG-UGCGa -5'
23038 5' -57.7 NC_005178.1 + 25143 0.67 0.349288
Target:  5'- -cGGugUAGCGGCcgaGCUgGUCGCGCUg -3'
miRNA:   3'- uaUCugGUCGCUGag-CGA-CGGUGCGA- -5'
23038 5' -57.7 NC_005178.1 + 10416 0.68 0.324154
Target:  5'- -gGGGCgAagaaauuuacGUGGCUCGCUGCCacaagGCGCUg -3'
miRNA:   3'- uaUCUGgU----------CGCUGAGCGACGG-----UGCGA- -5'
23038 5' -57.7 NC_005178.1 + 33599 0.69 0.292776
Target:  5'- --cGACCGGCGACgCGCU--CGCGCUc -3'
miRNA:   3'- uauCUGGUCGCUGaGCGAcgGUGCGA- -5'
23038 5' -57.7 NC_005178.1 + 33888 0.7 0.250237
Target:  5'- -aGGACCAG-GGCgUC-CUGCCGCGCc -3'
miRNA:   3'- uaUCUGGUCgCUG-AGcGACGGUGCGa -5'
23038 5' -57.7 NC_005178.1 + 24578 0.7 0.250237
Target:  5'- ---uACCGGCGACggUGUUGCCGuCGCUg -3'
miRNA:   3'- uaucUGGUCGCUGa-GCGACGGU-GCGA- -5'
23038 5' -57.7 NC_005178.1 + 16362 0.7 0.230949
Target:  5'- -cAGACCAGCGAgUCGggcgGCgGCGCc -3'
miRNA:   3'- uaUCUGGUCGCUgAGCga--CGgUGCGa -5'
23038 5' -57.7 NC_005178.1 + 9118 0.7 0.230949
Target:  5'- -gAGGCCGGUGAC-CGCgagcGCgGCGCg -3'
miRNA:   3'- uaUCUGGUCGCUGaGCGa---CGgUGCGa -5'
23038 5' -57.7 NC_005178.1 + 28414 0.71 0.218798
Target:  5'- --cGACCAGCGACa-GCauaccgGCCugGCUa -3'
miRNA:   3'- uauCUGGUCGCUGagCGa-----CGGugCGA- -5'
23038 5' -57.7 NC_005178.1 + 1198 0.71 0.196132
Target:  5'- cGUAGAgCguGC-ACUCGCcGCCGCGCUg -3'
miRNA:   3'- -UAUCU-GguCGcUGAGCGaCGGUGCGA- -5'
23038 5' -57.7 NC_005178.1 + 21076 0.72 0.180503
Target:  5'- -cAGGCCGGUGGCggUGCUGCCGCcCa -3'
miRNA:   3'- uaUCUGGUCGCUGa-GCGACGGUGcGa -5'
23038 5' -57.7 NC_005178.1 + 27369 0.74 0.124905
Target:  5'- aGUAGGCCGGCG---CGCUGCUGCGCc -3'
miRNA:   3'- -UAUCUGGUCGCugaGCGACGGUGCGa -5'
23038 5' -57.7 NC_005178.1 + 30849 0.76 0.090722
Target:  5'- -gAGGCC-GCGAC-CGCUGCCAgGCg -3'
miRNA:   3'- uaUCUGGuCGCUGaGCGACGGUgCGa -5'
23038 5' -57.7 NC_005178.1 + 18196 1.05 0.000557
Target:  5'- cAUAGACCAGCGACUCGCUGCCACGCUc -3'
miRNA:   3'- -UAUCUGGUCGCUGAGCGACGGUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.