Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23038 | 5' | -57.7 | NC_005178.1 | + | 28291 | 0.66 | 0.422846 |
Target: 5'- --uGACCGGCGcuGCgggaGCUGCCGgggcCGCUg -3' miRNA: 3'- uauCUGGUCGC--UGag--CGACGGU----GCGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 31362 | 0.66 | 0.404544 |
Target: 5'- gGUGGACCgcgAGCGGCagcuacuggacaugaCGCUGUUugGCUg -3' miRNA: 3'- -UAUCUGG---UCGCUGa--------------GCGACGGugCGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 32058 | 0.67 | 0.394178 |
Target: 5'- -cGGcACCcauAGCGGCUucUGCUgGCCGCGCa -3' miRNA: 3'- uaUC-UGG---UCGCUGA--GCGA-CGGUGCGa -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 12660 | 0.67 | 0.394178 |
Target: 5'- --cGGCCGGCGcGCUgGCgggugGCCugGUUg -3' miRNA: 3'- uauCUGGUCGC-UGAgCGa----CGGugCGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 16424 | 0.67 | 0.375779 |
Target: 5'- --uGACCuacuggcuGCGgaugcccgccaGCUCGCcGCCACGCUg -3' miRNA: 3'- uauCUGGu-------CGC-----------UGAGCGaCGGUGCGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 32510 | 0.67 | 0.366799 |
Target: 5'- uGUAGcuCCAGCGGaUCGC-GCCACgGCUg -3' miRNA: 3'- -UAUCu-GGUCGCUgAGCGaCGGUG-CGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 25882 | 0.67 | 0.349288 |
Target: 5'- -cAGGCCAuGCGGCa-GUUGCCgGCGCa -3' miRNA: 3'- uaUCUGGU-CGCUGagCGACGG-UGCGa -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 25143 | 0.67 | 0.349288 |
Target: 5'- -cGGugUAGCGGCcgaGCUgGUCGCGCUg -3' miRNA: 3'- uaUCugGUCGCUGag-CGA-CGGUGCGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 10416 | 0.68 | 0.324154 |
Target: 5'- -gGGGCgAagaaauuuacGUGGCUCGCUGCCacaagGCGCUg -3' miRNA: 3'- uaUCUGgU----------CGCUGAGCGACGG-----UGCGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 33599 | 0.69 | 0.292776 |
Target: 5'- --cGACCGGCGACgCGCU--CGCGCUc -3' miRNA: 3'- uauCUGGUCGCUGaGCGAcgGUGCGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 33888 | 0.7 | 0.250237 |
Target: 5'- -aGGACCAG-GGCgUC-CUGCCGCGCc -3' miRNA: 3'- uaUCUGGUCgCUG-AGcGACGGUGCGa -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 24578 | 0.7 | 0.250237 |
Target: 5'- ---uACCGGCGACggUGUUGCCGuCGCUg -3' miRNA: 3'- uaucUGGUCGCUGa-GCGACGGU-GCGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 16362 | 0.7 | 0.230949 |
Target: 5'- -cAGACCAGCGAgUCGggcgGCgGCGCc -3' miRNA: 3'- uaUCUGGUCGCUgAGCga--CGgUGCGa -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 9118 | 0.7 | 0.230949 |
Target: 5'- -gAGGCCGGUGAC-CGCgagcGCgGCGCg -3' miRNA: 3'- uaUCUGGUCGCUGaGCGa---CGgUGCGa -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 28414 | 0.71 | 0.218798 |
Target: 5'- --cGACCAGCGACa-GCauaccgGCCugGCUa -3' miRNA: 3'- uauCUGGUCGCUGagCGa-----CGGugCGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 1198 | 0.71 | 0.196132 |
Target: 5'- cGUAGAgCguGC-ACUCGCcGCCGCGCUg -3' miRNA: 3'- -UAUCU-GguCGcUGAGCGaCGGUGCGA- -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 21076 | 0.72 | 0.180503 |
Target: 5'- -cAGGCCGGUGGCggUGCUGCCGCcCa -3' miRNA: 3'- uaUCUGGUCGCUGa-GCGACGGUGcGa -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 27369 | 0.74 | 0.124905 |
Target: 5'- aGUAGGCCGGCG---CGCUGCUGCGCc -3' miRNA: 3'- -UAUCUGGUCGCugaGCGACGGUGCGa -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 30849 | 0.76 | 0.090722 |
Target: 5'- -gAGGCC-GCGAC-CGCUGCCAgGCg -3' miRNA: 3'- uaUCUGGuCGCUGaGCGACGGUgCGa -5' |
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23038 | 5' | -57.7 | NC_005178.1 | + | 18196 | 1.05 | 0.000557 |
Target: 5'- cAUAGACCAGCGACUCGCUGCCACGCUc -3' miRNA: 3'- -UAUCUGGUCGCUGAGCGACGGUGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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