miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23039 3' -50.1 NC_005178.1 + 225 0.66 0.862455
Target:  5'- -cCGCUGGAUgguuUAGcGCuCAUucUGUGCCa -3'
miRNA:   3'- cuGCGAUCUA----AUC-CGuGUA--ACACGGa -5'
23039 3' -50.1 NC_005178.1 + 11132 0.66 0.844186
Target:  5'- gGAUGCgGGAUcAGGCAUuugGUGCUUc -3'
miRNA:   3'- -CUGCGaUCUAaUCCGUGuaaCACGGA- -5'
23039 3' -50.1 NC_005178.1 + 18857 0.68 0.739124
Target:  5'- uACGCaa---UAGGCACAaUGUGCCg -3'
miRNA:   3'- cUGCGaucuaAUCCGUGUaACACGGa -5'
23039 3' -50.1 NC_005178.1 + 15259 0.7 0.633315
Target:  5'- gGAUGCagacGGAUUAGGC-CGUUG-GCCa -3'
miRNA:   3'- -CUGCGa---UCUAAUCCGuGUAACaCGGa -5'
23039 3' -50.1 NC_005178.1 + 18816 0.74 0.407916
Target:  5'- uGCGU---AUUAGGCACAaUGUGCCUa -3'
miRNA:   3'- cUGCGaucUAAUCCGUGUaACACGGA- -5'
23039 3' -50.1 NC_005178.1 + 18770 0.75 0.35862
Target:  5'- gGGCGUUAGGggaaaUGaauucggacaagcGGCACAUUGUGCCUa -3'
miRNA:   3'- -CUGCGAUCUa----AU-------------CCGUGUAACACGGA- -5'
23039 3' -50.1 NC_005178.1 + 18886 1.09 0.001785
Target:  5'- uGACGCUAGAUUAGGCACAUUGUGCCUa -3'
miRNA:   3'- -CUGCGAUCUAAUCCGUGUAACACGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.