miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23039 5' -53.2 NC_005178.1 + 36213 0.66 0.669643
Target:  5'- gGUAGGCGgGAUG-GCCGacgcgCCGAg -3'
miRNA:   3'- -UAUCCGUgUUACaCGGCgaacaGGCU- -5'
23039 5' -53.2 NC_005178.1 + 33520 0.66 0.669643
Target:  5'- --cGGCACGGUGUGCagguGCUgagCCGu -3'
miRNA:   3'- uauCCGUGUUACACGg---CGAacaGGCu -5'
23039 5' -53.2 NC_005178.1 + 18822 0.67 0.610155
Target:  5'- uUAGGCACAAUGUGCCuaaucuaGCgucaUG-CCa- -3'
miRNA:   3'- uAUCCGUGUUACACGG-------CGa---ACaGGcu -5'
23039 5' -53.2 NC_005178.1 + 27675 0.75 0.208431
Target:  5'- cAUGGGCGCGcaacaGcGCCGCUUGUUCGAu -3'
miRNA:   3'- -UAUCCGUGUua---CaCGGCGAACAGGCU- -5'
23039 5' -53.2 NC_005178.1 + 18852 1.07 0.001025
Target:  5'- aAUAGGCACAAUGUGCCGCUUGUCCGAa -3'
miRNA:   3'- -UAUCCGUGUUACACGGCGAACAGGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.