Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23040 | 3' | -56.4 | NC_005178.1 | + | 22226 | 1.11 | 0.000297 |
Target: 5'- aGCUGCCAGAAGCCGUAACCGGCAGCAg -3' miRNA: 3'- -CGACGGUCUUCGGCAUUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 21695 | 0.66 | 0.517748 |
Target: 5'- aGCUcGuCCGGGAGCUgagccgccgaGUAACCGGCcaucuucgccuggGGCGg -3' miRNA: 3'- -CGA-C-GGUCUUCGG----------CAUUGGCCG-------------UCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 15950 | 0.66 | 0.518834 |
Target: 5'- uGCgGCCGGuGGUCGaaGGCCuGCGGCAa -3' miRNA: 3'- -CGaCGGUCuUCGGCa-UUGGcCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 30197 | 0.65 | 0.537427 |
Target: 5'- cGCuUGUUgaGGGAGCCGaucaUcacuggacggaacuGACCGGCAGCGa -3' miRNA: 3'- -CG-ACGG--UCUUCGGC----A--------------UUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 5803 | 0.69 | 0.33433 |
Target: 5'- -gUGCCcGAGGCCGccACCGauGCGGCGa -3' miRNA: 3'- cgACGGuCUUCGGCauUGGC--CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 3432 | 0.69 | 0.351358 |
Target: 5'- --gGCCGGAagggccGGCCGUGcAUCGGguGCu -3' miRNA: 3'- cgaCGGUCU------UCGGCAU-UGGCCguCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16266 | 0.68 | 0.377124 |
Target: 5'- cGCUGCgGcauggccGAGGCCGgucACCGcucGCAGCAg -3' miRNA: 3'- -CGACGgU-------CUUCGGCau-UGGC---CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10336 | 0.67 | 0.425418 |
Target: 5'- aGCUGCUcGAcuaccaccAG-CGUGGCCGGCAGg- -3' miRNA: 3'- -CGACGGuCU--------UCgGCAUUGGCCGUCgu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16208 | 0.67 | 0.454471 |
Target: 5'- gGCgUGCCGGGcggguacuucccgAGCCG-GAUCGGCAGa- -3' miRNA: 3'- -CG-ACGGUCU-------------UCGGCaUUGGCCGUCgu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 20106 | 0.66 | 0.508016 |
Target: 5'- cGC-GCCAuucGAAGUCcaggaaacGGCCGGCAGCGg -3' miRNA: 3'- -CGaCGGU---CUUCGGca------UUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 17945 | 0.67 | 0.476165 |
Target: 5'- cGCUGgcguaccggguCCAGGAGCaCGUccugGACCucgccgagGGCGGCAg -3' miRNA: 3'- -CGAC-----------GGUCUUCG-GCA----UUGG--------CCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 9137 | 0.67 | 0.435313 |
Target: 5'- uCUGCUcgacgaucuucuGGAGGCCgGUGACCGcgagcGCGGCGc -3' miRNA: 3'- cGACGG------------UCUUCGG-CAUUGGC-----CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 6882 | 0.75 | 0.132808 |
Target: 5'- aCUGCCAGGcaaugAGgCGgcgGAUCGGCAGCAg -3' miRNA: 3'- cGACGGUCU-----UCgGCa--UUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 31491 | 0.66 | 0.497294 |
Target: 5'- aGCaGCUGGAuaucaGGCCa-GAUCGGCAGCGc -3' miRNA: 3'- -CGaCGGUCU-----UCGGcaUUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 37280 | 0.75 | 0.136673 |
Target: 5'- gGCUGUCAGGuccggcGCUGU-GCCGGUAGCGa -3' miRNA: 3'- -CGACGGUCUu-----CGGCAuUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 4811 | 0.67 | 0.434317 |
Target: 5'- --aGCCGGAcgGGCCGUagaagcaGACCaGGCcgGGCAa -3' miRNA: 3'- cgaCGGUCU--UCGGCA-------UUGG-CCG--UCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 23549 | 0.66 | 0.508016 |
Target: 5'- -gUGCCuuGAgcAGCCG--GCCGaGCAGCGg -3' miRNA: 3'- cgACGGu-CU--UCGGCauUGGC-CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16646 | 0.66 | 0.518834 |
Target: 5'- aGCuUGaCCAGggGCgGUAAUgacguugccaUGGCGGCc -3' miRNA: 3'- -CG-AC-GGUCuuCGgCAUUG----------GCCGUCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 31982 | 0.74 | 0.157587 |
Target: 5'- -aUGCC-GAuccagcgauGGCCGaUGACCGGCAGCGc -3' miRNA: 3'- cgACGGuCU---------UCGGC-AUUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10097 | 0.69 | 0.3601 |
Target: 5'- cGCUgGCCAGGAGCgCgGUGAUuuUGcGCAGCAc -3' miRNA: 3'- -CGA-CGGUCUUCG-G-CAUUG--GC-CGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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