miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23040 5' -56 NC_005178.1 + 27577 0.66 0.531581
Target:  5'- gUCGGCGUCGGcCUUCuuCU-GCGCc -3'
miRNA:   3'- aAGCCGCGGCUuGAAGucGAaCGCGu -5'
23040 5' -56 NC_005178.1 + 35045 0.66 0.531581
Target:  5'- gUCGGCGCC-----UCGGCcaGCGCGg -3'
miRNA:   3'- aAGCCGCGGcuugaAGUCGaaCGCGU- -5'
23040 5' -56 NC_005178.1 + 32678 0.66 0.498716
Target:  5'- cUCGGCGaCCGGGuCUUguaCAGCa-GCGCGa -3'
miRNA:   3'- aAGCCGC-GGCUU-GAA---GUCGaaCGCGU- -5'
23040 5' -56 NC_005178.1 + 20547 0.66 0.487961
Target:  5'- --gGGCGgCGAcCUUCAGCUggGCGg- -3'
miRNA:   3'- aagCCGCgGCUuGAAGUCGAa-CGCgu -5'
23040 5' -56 NC_005178.1 + 22142 0.66 0.487961
Target:  5'- gUUCGGCGCCGA-----AGCccGCGCu -3'
miRNA:   3'- -AAGCCGCGGCUugaagUCGaaCGCGu -5'
23040 5' -56 NC_005178.1 + 28164 0.66 0.477316
Target:  5'- gUCGGCGCCucGGCUguauccgccUCGGCcgGCGCc -3'
miRNA:   3'- aAGCCGCGGc-UUGA---------AGUCGaaCGCGu -5'
23040 5' -56 NC_005178.1 + 20682 0.67 0.435948
Target:  5'- -aCGGCGCCaaGGACUUggcCGGCUUGaagaGCu -3'
miRNA:   3'- aaGCCGCGG--CUUGAA---GUCGAACg---CGu -5'
23040 5' -56 NC_005178.1 + 28210 0.67 0.435948
Target:  5'- --aGGCGCCGAcCgUCAGCcccuggGCGCc -3'
miRNA:   3'- aagCCGCGGCUuGaAGUCGaa----CGCGu -5'
23040 5' -56 NC_005178.1 + 3397 0.67 0.425932
Target:  5'- cUCGGCGUCGAACgugUGGCcguCGCAg -3'
miRNA:   3'- aAGCCGCGGCUUGaa-GUCGaacGCGU- -5'
23040 5' -56 NC_005178.1 + 21250 0.67 0.425932
Target:  5'- aUCGGCGUCGAACcggaCGGCgugUGgGUg -3'
miRNA:   3'- aAGCCGCGGCUUGaa--GUCGa--ACgCGu -5'
23040 5' -56 NC_005178.1 + 32070 0.68 0.419988
Target:  5'- gUCGGCGUgGGucggcacccauagcgGCUUCuGCUggccGCGCAg -3'
miRNA:   3'- aAGCCGCGgCU---------------UGAAGuCGAa---CGCGU- -5'
23040 5' -56 NC_005178.1 + 24292 0.68 0.416054
Target:  5'- --gGGCGCCGGGCU---GCUcGCGCu -3'
miRNA:   3'- aagCCGCGGCUUGAaguCGAaCGCGu -5'
23040 5' -56 NC_005178.1 + 25282 0.68 0.377984
Target:  5'- aUCcGCGCUGAcCUUCAGCaggGUGCGg -3'
miRNA:   3'- aAGcCGCGGCUuGAAGUCGaa-CGCGU- -5'
23040 5' -56 NC_005178.1 + 29875 0.68 0.377984
Target:  5'- uUUCGGCG-UGAACgcgCAGCUUG-GCGa -3'
miRNA:   3'- -AAGCCGCgGCUUGaa-GUCGAACgCGU- -5'
23040 5' -56 NC_005178.1 + 3939 0.69 0.3338
Target:  5'- -gCGGCgGCCGGugUUCGGgUcaacgaUGCGCGg -3'
miRNA:   3'- aaGCCG-CGGCUugAAGUCgA------ACGCGU- -5'
23040 5' -56 NC_005178.1 + 23807 0.69 0.32543
Target:  5'- -aCGGCGCagcagGAAC-UCGGCUucgGCGCGa -3'
miRNA:   3'- aaGCCGCGg----CUUGaAGUCGAa--CGCGU- -5'
23040 5' -56 NC_005178.1 + 11763 0.7 0.278503
Target:  5'- -aCGGCGCCcagcGAGCgaUCAGCgauucgacggUGCGCAg -3'
miRNA:   3'- aaGCCGCGG----CUUGa-AGUCGa---------ACGCGU- -5'
23040 5' -56 NC_005178.1 + 3756 0.71 0.269074
Target:  5'- gUCGGCGCCGAugUagccgggcaguuccUUGGCg-GCGCGa -3'
miRNA:   3'- aAGCCGCGGCUugA--------------AGUCGaaCGCGU- -5'
23040 5' -56 NC_005178.1 + 11647 0.71 0.237127
Target:  5'- aUCGGgGCuCGAuCUUCGGgUUGUGCGg -3'
miRNA:   3'- aAGCCgCG-GCUuGAAGUCgAACGCGU- -5'
23040 5' -56 NC_005178.1 + 7891 0.72 0.230753
Target:  5'- -gCGGCGCCGAugcggucCUggAGCUacUGCGCAg -3'
miRNA:   3'- aaGCCGCGGCUu------GAagUCGA--ACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.