Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23040 | 5' | -56 | NC_005178.1 | + | 27577 | 0.66 | 0.531581 |
Target: 5'- gUCGGCGUCGGcCUUCuuCU-GCGCc -3' miRNA: 3'- aAGCCGCGGCUuGAAGucGAaCGCGu -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 35045 | 0.66 | 0.531581 |
Target: 5'- gUCGGCGCC-----UCGGCcaGCGCGg -3' miRNA: 3'- aAGCCGCGGcuugaAGUCGaaCGCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 32678 | 0.66 | 0.498716 |
Target: 5'- cUCGGCGaCCGGGuCUUguaCAGCa-GCGCGa -3' miRNA: 3'- aAGCCGC-GGCUU-GAA---GUCGaaCGCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 22142 | 0.66 | 0.487961 |
Target: 5'- gUUCGGCGCCGA-----AGCccGCGCu -3' miRNA: 3'- -AAGCCGCGGCUugaagUCGaaCGCGu -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 20547 | 0.66 | 0.487961 |
Target: 5'- --gGGCGgCGAcCUUCAGCUggGCGg- -3' miRNA: 3'- aagCCGCgGCUuGAAGUCGAa-CGCgu -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 28164 | 0.66 | 0.477316 |
Target: 5'- gUCGGCGCCucGGCUguauccgccUCGGCcgGCGCc -3' miRNA: 3'- aAGCCGCGGc-UUGA---------AGUCGaaCGCGu -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 20682 | 0.67 | 0.435948 |
Target: 5'- -aCGGCGCCaaGGACUUggcCGGCUUGaagaGCu -3' miRNA: 3'- aaGCCGCGG--CUUGAA---GUCGAACg---CGu -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 28210 | 0.67 | 0.435948 |
Target: 5'- --aGGCGCCGAcCgUCAGCcccuggGCGCc -3' miRNA: 3'- aagCCGCGGCUuGaAGUCGaa----CGCGu -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 21250 | 0.67 | 0.425932 |
Target: 5'- aUCGGCGUCGAACcggaCGGCgugUGgGUg -3' miRNA: 3'- aAGCCGCGGCUUGaa--GUCGa--ACgCGu -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 3397 | 0.67 | 0.425932 |
Target: 5'- cUCGGCGUCGAACgugUGGCcguCGCAg -3' miRNA: 3'- aAGCCGCGGCUUGaa-GUCGaacGCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 32070 | 0.68 | 0.419988 |
Target: 5'- gUCGGCGUgGGucggcacccauagcgGCUUCuGCUggccGCGCAg -3' miRNA: 3'- aAGCCGCGgCU---------------UGAAGuCGAa---CGCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 24292 | 0.68 | 0.416054 |
Target: 5'- --gGGCGCCGGGCU---GCUcGCGCu -3' miRNA: 3'- aagCCGCGGCUUGAaguCGAaCGCGu -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 25282 | 0.68 | 0.377984 |
Target: 5'- aUCcGCGCUGAcCUUCAGCaggGUGCGg -3' miRNA: 3'- aAGcCGCGGCUuGAAGUCGaa-CGCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 29875 | 0.68 | 0.377984 |
Target: 5'- uUUCGGCG-UGAACgcgCAGCUUG-GCGa -3' miRNA: 3'- -AAGCCGCgGCUUGaa-GUCGAACgCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 3939 | 0.69 | 0.3338 |
Target: 5'- -gCGGCgGCCGGugUUCGGgUcaacgaUGCGCGg -3' miRNA: 3'- aaGCCG-CGGCUugAAGUCgA------ACGCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 23807 | 0.69 | 0.32543 |
Target: 5'- -aCGGCGCagcagGAAC-UCGGCUucgGCGCGa -3' miRNA: 3'- aaGCCGCGg----CUUGaAGUCGAa--CGCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 11763 | 0.7 | 0.278503 |
Target: 5'- -aCGGCGCCcagcGAGCgaUCAGCgauucgacggUGCGCAg -3' miRNA: 3'- aaGCCGCGG----CUUGa-AGUCGa---------ACGCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 3756 | 0.71 | 0.269074 |
Target: 5'- gUCGGCGCCGAugUagccgggcaguuccUUGGCg-GCGCGa -3' miRNA: 3'- aAGCCGCGGCUugA--------------AGUCGaaCGCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 11647 | 0.71 | 0.237127 |
Target: 5'- aUCGGgGCuCGAuCUUCGGgUUGUGCGg -3' miRNA: 3'- aAGCCgCG-GCUuGAAGUCgAACGCGU- -5' |
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23040 | 5' | -56 | NC_005178.1 | + | 7891 | 0.72 | 0.230753 |
Target: 5'- -gCGGCGCCGAugcggucCUggAGCUacUGCGCAg -3' miRNA: 3'- aaGCCGCGGCUu------GAagUCGA--ACGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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