miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23041 3' -54 NC_005178.1 + 24796 0.66 0.696565
Target:  5'- gGUGGGUgAGCUGCuCuuCGAAGGUcaGCUCg -3'
miRNA:   3'- -CGCCUA-UCGACGcGu-GCUUCUA--CGGG- -5'
23041 3' -54 NC_005178.1 + 29020 0.66 0.685309
Target:  5'- cGCaGGGUcacCUgGCGCACGgcGAUGgCCg -3'
miRNA:   3'- -CG-CCUAuc-GA-CGCGUGCuuCUACgGG- -5'
23041 3' -54 NC_005178.1 + 12891 0.66 0.685309
Target:  5'- aGCGGcgAGCgGUGCcauaGGAGAcGCCg -3'
miRNA:   3'- -CGCCuaUCGaCGCGug--CUUCUaCGGg -5'
23041 3' -54 NC_005178.1 + 9580 0.66 0.685309
Target:  5'- uGCGccgcGCUGCGCugGgcGGUcGCCg -3'
miRNA:   3'- -CGCcuauCGACGCGugCuuCUA-CGGg -5'
23041 3' -54 NC_005178.1 + 25559 0.66 0.673997
Target:  5'- cGCuGGUGGCUGCcCGCGuggcGGUGUUCa -3'
miRNA:   3'- -CGcCUAUCGACGcGUGCuu--CUACGGG- -5'
23041 3' -54 NC_005178.1 + 34521 0.66 0.673997
Target:  5'- cGCGGuc-GCUGCGuCGCaGggGcgGCgCu -3'
miRNA:   3'- -CGCCuauCGACGC-GUG-CuuCuaCGgG- -5'
23041 3' -54 NC_005178.1 + 7709 0.66 0.673997
Target:  5'- aCGGGccAGCUcGCGCugGAGGucGCCg -3'
miRNA:   3'- cGCCUa-UCGA-CGCGugCUUCuaCGGg -5'
23041 3' -54 NC_005178.1 + 15021 0.66 0.673997
Target:  5'- uGCGGAUGGCgGCcucgacCACGuccAGGAcGCCUg -3'
miRNA:   3'- -CGCCUAUCGaCGc-----GUGC---UUCUaCGGG- -5'
23041 3' -54 NC_005178.1 + 439 0.66 0.662643
Target:  5'- uGCGGAUcGCUGagauaCugGAGGGguccaaGCCCu -3'
miRNA:   3'- -CGCCUAuCGACgc---GugCUUCUa-----CGGG- -5'
23041 3' -54 NC_005178.1 + 25137 0.66 0.651258
Target:  5'- aGCGGccgAGCUGguCGCGCu--GGUGUCCu -3'
miRNA:   3'- -CGCCua-UCGAC--GCGUGcuuCUACGGG- -5'
23041 3' -54 NC_005178.1 + 18669 0.67 0.636432
Target:  5'- uGCuGGAUAGCUGCGUAgcuAGAUuggaaccgaucugcGCCUg -3'
miRNA:   3'- -CG-CCUAUCGACGCGUgcuUCUA--------------CGGG- -5'
23041 3' -54 NC_005178.1 + 28284 0.67 0.617036
Target:  5'- cUGGAUAGCggcgGCGCcgcucaGGAGcGUGCCg -3'
miRNA:   3'- cGCCUAUCGa---CGCGug----CUUC-UACGGg -5'
23041 3' -54 NC_005178.1 + 23227 0.67 0.605643
Target:  5'- cUGGucgAGCgcaucCGCGCcGAGGUGCCCg -3'
miRNA:   3'- cGCCua-UCGac---GCGUGcUUCUACGGG- -5'
23041 3' -54 NC_005178.1 + 9541 0.69 0.516162
Target:  5'- cGCGGGaacgccaacgAGCgaaGCGCGAGcgcGAUGCCCu -3'
miRNA:   3'- -CGCCUa---------UCGacgCGUGCUU---CUACGGG- -5'
23041 3' -54 NC_005178.1 + 27733 0.69 0.505313
Target:  5'- aGCGGcgcuGUUGCGCGCcc--AUGCCCa -3'
miRNA:   3'- -CGCCuau-CGACGCGUGcuucUACGGG- -5'
23041 3' -54 NC_005178.1 + 12658 0.69 0.505313
Target:  5'- gGCGGccGGC-GCGCugGcGGGUGgCCu -3'
miRNA:   3'- -CGCCuaUCGaCGCGugCuUCUACgGG- -5'
23041 3' -54 NC_005178.1 + 2986 0.69 0.494563
Target:  5'- cGCGGAUGGCUGCcgaGCGugcgcaGCCUg -3'
miRNA:   3'- -CGCCUAUCGACGcg-UGCuucua-CGGG- -5'
23041 3' -54 NC_005178.1 + 28538 0.69 0.483919
Target:  5'- aGCGGAguaAGCccugGCuGCAUGGcGGAUGCCg -3'
miRNA:   3'- -CGCCUa--UCGa---CG-CGUGCU-UCUACGGg -5'
23041 3' -54 NC_005178.1 + 25519 0.7 0.451651
Target:  5'- aGCGGAUGGCaggaaagcgcccgUGCGCAaucggcguCGAuGaAUGCCUa -3'
miRNA:   3'- -CGCCUAUCG-------------ACGCGU--------GCUuC-UACGGG- -5'
23041 3' -54 NC_005178.1 + 16576 0.7 0.412794
Target:  5'- gGCGGggGGCgcgGCGUGCGucGAgguUGCCg -3'
miRNA:   3'- -CGCCuaUCGa--CGCGUGCuuCU---ACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.