Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23041 | 3' | -54 | NC_005178.1 | + | 35312 | 0.72 | 0.323209 |
Target: 5'- uCGGcgcAGCcGCGCGCGAGGGUGaCCg -3' miRNA: 3'- cGCCua-UCGaCGCGUGCUUCUACgGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 34521 | 0.66 | 0.673997 |
Target: 5'- cGCGGuc-GCUGCGuCGCaGggGcgGCgCu -3' miRNA: 3'- -CGCCuauCGACGC-GUG-CuuCuaCGgG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 32739 | 0.73 | 0.307127 |
Target: 5'- cGUGGAUAGCUGcCGCAuaacgugcgugucCGAAGAcgaacugauggaccaGCCCg -3' miRNA: 3'- -CGCCUAUCGAC-GCGU-------------GCUUCUa--------------CGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 31522 | 0.75 | 0.229592 |
Target: 5'- gGCGGucuggcgauGCUGCGCgGCGAGGAcGCCUu -3' miRNA: 3'- -CGCCuau------CGACGCG-UGCUUCUaCGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 29452 | 0.75 | 0.20465 |
Target: 5'- cGCGGAgauagcAGCUGCGCuCGuaggggcugcuGAUGCCCc -3' miRNA: 3'- -CGCCUa-----UCGACGCGuGCuu---------CUACGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 29020 | 0.66 | 0.685309 |
Target: 5'- cGCaGGGUcacCUgGCGCACGgcGAUGgCCg -3' miRNA: 3'- -CG-CCUAuc-GA-CGCGUGCuuCUACgGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 28538 | 0.69 | 0.483919 |
Target: 5'- aGCGGAguaAGCccugGCuGCAUGGcGGAUGCCg -3' miRNA: 3'- -CGCCUa--UCGa---CG-CGUGCU-UCUACGGg -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 28284 | 0.67 | 0.617036 |
Target: 5'- cUGGAUAGCggcgGCGCcgcucaGGAGcGUGCCg -3' miRNA: 3'- cGCCUAUCGa---CGCGug----CUUC-UACGGg -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 27733 | 0.69 | 0.505313 |
Target: 5'- aGCGGcgcuGUUGCGCGCcc--AUGCCCa -3' miRNA: 3'- -CGCCuau-CGACGCGUGcuucUACGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 25559 | 0.66 | 0.673997 |
Target: 5'- cGCuGGUGGCUGCcCGCGuggcGGUGUUCa -3' miRNA: 3'- -CGcCUAUCGACGcGUGCuu--CUACGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 25519 | 0.7 | 0.451651 |
Target: 5'- aGCGGAUGGCaggaaagcgcccgUGCGCAaucggcguCGAuGaAUGCCUa -3' miRNA: 3'- -CGCCUAUCG-------------ACGCGU--------GCUuC-UACGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 25137 | 0.66 | 0.651258 |
Target: 5'- aGCGGccgAGCUGguCGCGCu--GGUGUCCu -3' miRNA: 3'- -CGCCua-UCGAC--GCGUGcuuCUACGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 24796 | 0.66 | 0.696565 |
Target: 5'- gGUGGGUgAGCUGCuCuuCGAAGGUcaGCUCg -3' miRNA: 3'- -CGCCUA-UCGACGcGu-GCUUCUA--CGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 24450 | 0.73 | 0.307127 |
Target: 5'- aCGGucGGCUGCgGCGCGguGAacaUGCCCa -3' miRNA: 3'- cGCCuaUCGACG-CGUGCuuCU---ACGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 23227 | 0.67 | 0.605643 |
Target: 5'- cUGGucgAGCgcaucCGCGCcGAGGUGCCCg -3' miRNA: 3'- cGCCua-UCGac---GCGUGcUUCUACGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 22381 | 1.14 | 0.000375 |
Target: 5'- gGCGGAUAGCUGCGCACGAAGAUGCCCu -3' miRNA: 3'- -CGCCUAUCGACGCGUGCUUCUACGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 18669 | 0.67 | 0.636432 |
Target: 5'- uGCuGGAUAGCUGCGUAgcuAGAUuggaaccgaucugcGCCUg -3' miRNA: 3'- -CG-CCUAUCGACGCGUgcuUCUA--------------CGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 16576 | 0.7 | 0.412794 |
Target: 5'- gGCGGggGGCgcgGCGUGCGucGAgguUGCCg -3' miRNA: 3'- -CGCCuaUCGa--CGCGUGCuuCU---ACGGg -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 15021 | 0.66 | 0.673997 |
Target: 5'- uGCGGAUGGCgGCcucgacCACGuccAGGAcGCCUg -3' miRNA: 3'- -CGCCUAUCGaCGc-----GUGC---UUCUaCGGG- -5' |
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23041 | 3' | -54 | NC_005178.1 | + | 12891 | 0.66 | 0.685309 |
Target: 5'- aGCGGcgAGCgGUGCcauaGGAGAcGCCg -3' miRNA: 3'- -CGCCuaUCGaCGCGug--CUUCUaCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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