miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23041 5' -61.5 NC_005178.1 + 1379 0.72 0.122667
Target:  5'- -aGGGCUUgaaCAUgGCCCGCCGCaaagacgaucgaacgCUGGa -3'
miRNA:   3'- gaCCCGAA---GUAgCGGGCGGCG---------------GACCg -5'
23041 5' -61.5 NC_005178.1 + 5120 0.66 0.3162
Target:  5'- gCUGGGUUccggcccagccagugUCucuggaggaCGCCCGCaaCCUGGCg -3'
miRNA:   3'- -GACCCGA---------------AGua-------GCGGGCGgcGGACCG- -5'
23041 5' -61.5 NC_005178.1 + 5819 0.67 0.237519
Target:  5'- gCUGGGCgacacggUCGU-GCCCgagGCCGCCaccgaugcGGCg -3'
miRNA:   3'- -GACCCGa------AGUAgCGGG---CGGCGGa-------CCG- -5'
23041 5' -61.5 NC_005178.1 + 6799 0.66 0.276687
Target:  5'- aUGGGgaUCAgUGCUCGgCGCaUGGCg -3'
miRNA:   3'- gACCCgaAGUaGCGGGCgGCGgACCG- -5'
23041 5' -61.5 NC_005178.1 + 6885 0.66 0.301087
Target:  5'- -gGGGCgagcguccgcccgucUUCGUCcagcuGCUCGCCGCUgaggUGGCc -3'
miRNA:   3'- gaCCCG---------------AAGUAG-----CGGGCGGCGG----ACCG- -5'
23041 5' -61.5 NC_005178.1 + 7186 0.68 0.214065
Target:  5'- -gGGGUugUUCAgcggCGCCgGCCGCUggaGGUa -3'
miRNA:   3'- gaCCCG--AAGUa---GCGGgCGGCGGa--CCG- -5'
23041 5' -61.5 NC_005178.1 + 7322 0.69 0.197281
Target:  5'- aUGGGgguccgcCUUCAUCGCCUGgaGCCgacagaggGGCg -3'
miRNA:   3'- gACCC-------GAAGUAGCGGGCggCGGa-------CCG- -5'
23041 5' -61.5 NC_005178.1 + 7415 0.68 0.214065
Target:  5'- aUGGGCUUCcagCGCgaCGCCucgGCC-GGCa -3'
miRNA:   3'- gACCCGAAGua-GCGg-GCGG---CGGaCCG- -5'
23041 5' -61.5 NC_005178.1 + 8739 0.68 0.214065
Target:  5'- -aGGGCUaCuUCGCCCuuGCCGUg-GGCg -3'
miRNA:   3'- gaCCCGAaGuAGCGGG--CGGCGgaCCG- -5'
23041 5' -61.5 NC_005178.1 + 8877 0.72 0.117992
Target:  5'- cCUGGGCUcCAUCGCCCGguacauCCagacCCUGGg -3'
miRNA:   3'- -GACCCGAaGUAGCGGGC------GGc---GGACCg -5'
23041 5' -61.5 NC_005178.1 + 10160 0.66 0.283695
Target:  5'- -aGGcGCUuaUCAUCGaCaggaGCCGCCaUGGCc -3'
miRNA:   3'- gaCC-CGA--AGUAGCgGg---CGGCGG-ACCG- -5'
23041 5' -61.5 NC_005178.1 + 10355 0.66 0.305562
Target:  5'- -cGGGCUg---CGCUgGCCGagCUGGUg -3'
miRNA:   3'- gaCCCGAaguaGCGGgCGGCg-GACCG- -5'
23041 5' -61.5 NC_005178.1 + 11148 0.66 0.290844
Target:  5'- -cGGGCgccc-UGgCCGCCGCCcugGGCu -3'
miRNA:   3'- gaCCCGaaguaGCgGGCGGCGGa--CCG- -5'
23041 5' -61.5 NC_005178.1 + 12675 0.66 0.313132
Target:  5'- -cGGGUggccUgGUUGCCUGCgGCCUGcucGCg -3'
miRNA:   3'- gaCCCGa---AgUAGCGGGCGgCGGAC---CG- -5'
23041 5' -61.5 NC_005178.1 + 12925 0.68 0.231461
Target:  5'- gUGGGCUggaggaCGUgGCgCGCCaggugcuggccgGCCUGGUg -3'
miRNA:   3'- gACCCGAa-----GUAgCGgGCGG------------CGGACCG- -5'
23041 5' -61.5 NC_005178.1 + 16049 0.68 0.231461
Target:  5'- -cGGGCUguucCGCgUGCUGgCCUGGCc -3'
miRNA:   3'- gaCCCGAaguaGCGgGCGGC-GGACCG- -5'
23041 5' -61.5 NC_005178.1 + 16682 0.66 0.318515
Target:  5'- cCUGGGCgaUCAggccggcgcaggcaUCGCCCaacugaGCCGgcgcCCUGGUc -3'
miRNA:   3'- -GACCCGa-AGU--------------AGCGGG------CGGC----GGACCG- -5'
23041 5' -61.5 NC_005178.1 + 17387 0.73 0.094318
Target:  5'- gCUGGGCgaCcUCGgcCCCGCCGUCcGGCg -3'
miRNA:   3'- -GACCCGaaGuAGC--GGGCGGCGGaCCG- -5'
23041 5' -61.5 NC_005178.1 + 17847 0.72 0.121314
Target:  5'- cCUGGGag----CGCCUGCCGCCcucGGCg -3'
miRNA:   3'- -GACCCgaaguaGCGGGCGGCGGa--CCG- -5'
23041 5' -61.5 NC_005178.1 + 18915 0.68 0.214065
Target:  5'- uUGGGU----UCGCCuCGCCGUuguggCUGGCa -3'
miRNA:   3'- gACCCGaaguAGCGG-GCGGCG-----GACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.