Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 1379 | 0.72 | 0.122667 |
Target: 5'- -aGGGCUUgaaCAUgGCCCGCCGCaaagacgaucgaacgCUGGa -3' miRNA: 3'- gaCCCGAA---GUAgCGGGCGGCG---------------GACCg -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 5120 | 0.66 | 0.3162 |
Target: 5'- gCUGGGUUccggcccagccagugUCucuggaggaCGCCCGCaaCCUGGCg -3' miRNA: 3'- -GACCCGA---------------AGua-------GCGGGCGgcGGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 5819 | 0.67 | 0.237519 |
Target: 5'- gCUGGGCgacacggUCGU-GCCCgagGCCGCCaccgaugcGGCg -3' miRNA: 3'- -GACCCGa------AGUAgCGGG---CGGCGGa-------CCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 6799 | 0.66 | 0.276687 |
Target: 5'- aUGGGgaUCAgUGCUCGgCGCaUGGCg -3' miRNA: 3'- gACCCgaAGUaGCGGGCgGCGgACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 6885 | 0.66 | 0.301087 |
Target: 5'- -gGGGCgagcguccgcccgucUUCGUCcagcuGCUCGCCGCUgaggUGGCc -3' miRNA: 3'- gaCCCG---------------AAGUAG-----CGGGCGGCGG----ACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 7186 | 0.68 | 0.214065 |
Target: 5'- -gGGGUugUUCAgcggCGCCgGCCGCUggaGGUa -3' miRNA: 3'- gaCCCG--AAGUa---GCGGgCGGCGGa--CCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 7322 | 0.69 | 0.197281 |
Target: 5'- aUGGGgguccgcCUUCAUCGCCUGgaGCCgacagaggGGCg -3' miRNA: 3'- gACCC-------GAAGUAGCGGGCggCGGa-------CCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 7415 | 0.68 | 0.214065 |
Target: 5'- aUGGGCUUCcagCGCgaCGCCucgGCC-GGCa -3' miRNA: 3'- gACCCGAAGua-GCGg-GCGG---CGGaCCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 8739 | 0.68 | 0.214065 |
Target: 5'- -aGGGCUaCuUCGCCCuuGCCGUg-GGCg -3' miRNA: 3'- gaCCCGAaGuAGCGGG--CGGCGgaCCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 8877 | 0.72 | 0.117992 |
Target: 5'- cCUGGGCUcCAUCGCCCGguacauCCagacCCUGGg -3' miRNA: 3'- -GACCCGAaGUAGCGGGC------GGc---GGACCg -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 10160 | 0.66 | 0.283695 |
Target: 5'- -aGGcGCUuaUCAUCGaCaggaGCCGCCaUGGCc -3' miRNA: 3'- gaCC-CGA--AGUAGCgGg---CGGCGG-ACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 10355 | 0.66 | 0.305562 |
Target: 5'- -cGGGCUg---CGCUgGCCGagCUGGUg -3' miRNA: 3'- gaCCCGAaguaGCGGgCGGCg-GACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 11148 | 0.66 | 0.290844 |
Target: 5'- -cGGGCgccc-UGgCCGCCGCCcugGGCu -3' miRNA: 3'- gaCCCGaaguaGCgGGCGGCGGa--CCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 12675 | 0.66 | 0.313132 |
Target: 5'- -cGGGUggccUgGUUGCCUGCgGCCUGcucGCg -3' miRNA: 3'- gaCCCGa---AgUAGCGGGCGgCGGAC---CG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 12925 | 0.68 | 0.231461 |
Target: 5'- gUGGGCUggaggaCGUgGCgCGCCaggugcuggccgGCCUGGUg -3' miRNA: 3'- gACCCGAa-----GUAgCGgGCGG------------CGGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 16049 | 0.68 | 0.231461 |
Target: 5'- -cGGGCUguucCGCgUGCUGgCCUGGCc -3' miRNA: 3'- gaCCCGAaguaGCGgGCGGC-GGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 16682 | 0.66 | 0.318515 |
Target: 5'- cCUGGGCgaUCAggccggcgcaggcaUCGCCCaacugaGCCGgcgcCCUGGUc -3' miRNA: 3'- -GACCCGa-AGU--------------AGCGGG------CGGC----GGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 17387 | 0.73 | 0.094318 |
Target: 5'- gCUGGGCgaCcUCGgcCCCGCCGUCcGGCg -3' miRNA: 3'- -GACCCGaaGuAGC--GGGCGGCGGaCCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 17847 | 0.72 | 0.121314 |
Target: 5'- cCUGGGag----CGCCUGCCGCCcucGGCg -3' miRNA: 3'- -GACCCgaaguaGCGGGCGGCGGa--CCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 18915 | 0.68 | 0.214065 |
Target: 5'- uUGGGU----UCGCCuCGCCGUuguggCUGGCa -3' miRNA: 3'- gACCCGaaguAGCGG-GCGGCG-----GACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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