miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23041 5' -61.5 NC_005178.1 + 18915 0.68 0.214065
Target:  5'- uUGGGU----UCGCCuCGCCGUuguggCUGGCa -3'
miRNA:   3'- gACCCGaaguAGCGG-GCGGCG-----GACCG- -5'
23041 5' -61.5 NC_005178.1 + 7186 0.68 0.214065
Target:  5'- -gGGGUugUUCAgcggCGCCgGCCGCUggaGGUa -3'
miRNA:   3'- gaCCCG--AAGUa---GCGGgCGGCGGa--CCG- -5'
23041 5' -61.5 NC_005178.1 + 7415 0.68 0.214065
Target:  5'- aUGGGCUUCcagCGCgaCGCCucgGCC-GGCa -3'
miRNA:   3'- gACCCGAAGua-GCGg-GCGG---CGGaCCG- -5'
23041 5' -61.5 NC_005178.1 + 8739 0.68 0.214065
Target:  5'- -aGGGCUaCuUCGCCCuuGCCGUg-GGCg -3'
miRNA:   3'- gaCCCGAaGuAGCGGG--CGGCGgaCCG- -5'
23041 5' -61.5 NC_005178.1 + 19970 0.68 0.208521
Target:  5'- aCU-GGCggCAUCGaUCCGCCaGCCcGGCa -3'
miRNA:   3'- -GAcCCGaaGUAGC-GGGCGG-CGGaCCG- -5'
23041 5' -61.5 NC_005178.1 + 7322 0.69 0.197281
Target:  5'- aUGGGgguccgcCUUCAUCGCCUGgaGCCgacagaggGGCg -3'
miRNA:   3'- gACCC-------GAAGUAGCGGGCggCGGa-------CCG- -5'
23041 5' -61.5 NC_005178.1 + 28543 0.69 0.192628
Target:  5'- aCUGGGCgggggcCGUcCGCCgCGCCaCCgggGGCg -3'
miRNA:   3'- -GACCCGaa----GUA-GCGG-GCGGcGGa--CCG- -5'
23041 5' -61.5 NC_005178.1 + 23519 0.69 0.182631
Target:  5'- --cGGCUUCG-CGCCgGgCGCcCUGGCc -3'
miRNA:   3'- gacCCGAAGUaGCGGgCgGCG-GACCG- -5'
23041 5' -61.5 NC_005178.1 + 26129 0.69 0.182631
Target:  5'- -cGGGCgaUGUCGUCCagGCCGUcgCUGGCg -3'
miRNA:   3'- gaCCCGaaGUAGCGGG--CGGCG--GACCG- -5'
23041 5' -61.5 NC_005178.1 + 24149 0.69 0.182631
Target:  5'- -cGGGCgaggUAcUC-CCCGCCGaCCUGGUg -3'
miRNA:   3'- gaCCCGaa--GU-AGcGGGCGGC-GGACCG- -5'
23041 5' -61.5 NC_005178.1 + 1379 0.72 0.122667
Target:  5'- -aGGGCUUgaaCAUgGCCCGCCGCaaagacgaucgaacgCUGGa -3'
miRNA:   3'- gaCCCGAA---GUAgCGGGCGGCG---------------GACCg -5'
23041 5' -61.5 NC_005178.1 + 17847 0.72 0.121314
Target:  5'- cCUGGGag----CGCCUGCCGCCcucGGCg -3'
miRNA:   3'- -GACCCgaaguaGCGGGCGGCGGa--CCG- -5'
23041 5' -61.5 NC_005178.1 + 8877 0.72 0.117992
Target:  5'- cCUGGGCUcCAUCGCCCGguacauCCagacCCUGGg -3'
miRNA:   3'- -GACCCGAaGUAGCGGGC------GGc---GGACCg -5'
23041 5' -61.5 NC_005178.1 + 17387 0.73 0.094318
Target:  5'- gCUGGGCgaCcUCGgcCCCGCCGUCcGGCg -3'
miRNA:   3'- -GACCCGaaGuAGC--GGGCGGCGGaCCG- -5'
23041 5' -61.5 NC_005178.1 + 23447 0.73 0.091696
Target:  5'- gCUGGGUgaccgUCugaAUCGCCCgacuGCCGCcCUGGUg -3'
miRNA:   3'- -GACCCGa----AG---UAGCGGG----CGGCG-GACCG- -5'
23041 5' -61.5 NC_005178.1 + 24979 0.81 0.022942
Target:  5'- -aGGGUUUUuUCGUCCGCCGCCUguGGCg -3'
miRNA:   3'- gaCCCGAAGuAGCGGGCGGCGGA--CCG- -5'
23041 5' -61.5 NC_005178.1 + 22344 1.11 0.000097
Target:  5'- gCUGGGCUUCAUCGCCCGCCGCCUGGCg -3'
miRNA:   3'- -GACCCGAAGUAGCGGGCGGCGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.