Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23044 | 5' | -57.1 | NC_005178.1 | + | 1493 | 0.66 | 0.481836 |
Target: 5'- gUAUAGCGC-GGGC------CGGCUGCg -3' miRNA: 3'- -AUAUCGCGuCCCGuugccaGCCGACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 23463 | 0.66 | 0.486042 |
Target: 5'- --gGGCGCccGGcGCGAagccggcccgcugcuCGGcCGGCUGCu -3' miRNA: 3'- auaUCGCGu-CC-CGUU---------------GCCaGCCGACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 19497 | 0.66 | 0.486042 |
Target: 5'- aAUAGCGCaucacccugucaccgAGGccgaGCAGC--UCGGCUGCg -3' miRNA: 3'- aUAUCGCG---------------UCC----CGUUGccAGCCGACG- -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 12904 | 0.66 | 0.492383 |
Target: 5'- --cGGCGCAGuugcuGGcCggUGGUgGGCUGg -3' miRNA: 3'- auaUCGCGUC-----CC-GuuGCCAgCCGACg -5' |
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23044 | 5' | -57.1 | NC_005178.1 | + | 24116 | 0.66 | 0.492383 |
Target: 5'- ---uGUGCAGGGUgauguuGACGGUggCGGUcuUGCc -3' miRNA: 3'- auauCGCGUCCCG------UUGCCA--GCCG--ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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