miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23046 3' -60.6 NC_005178.1 + 14287 0.71 0.154706
Target:  5'- aGGu---CCAGGUCUUCGgCUCCGGCa -3'
miRNA:   3'- gCCuguuGGUCCAGGAGCgGGGGCUG- -5'
23046 3' -60.6 NC_005178.1 + 24907 0.73 0.12055
Target:  5'- gCGGAUGACUGGGUCCguUCGCUCCguccaagCGACg -3'
miRNA:   3'- -GCCUGUUGGUCCAGG--AGCGGGG-------GCUG- -5'
23046 3' -60.6 NC_005178.1 + 20255 0.66 0.35946
Target:  5'- gCGGccGCGACCuuuGG-CCUCuacaaCCCCGACg -3'
miRNA:   3'- -GCC--UGUUGGu--CCaGGAGcg---GGGGCUG- -5'
23046 3' -60.6 NC_005178.1 + 36531 0.66 0.334803
Target:  5'- gGGACGGCCGagcGGUagCCUUGCCCgCuACg -3'
miRNA:   3'- gCCUGUUGGU---CCA--GGAGCGGGgGcUG- -5'
23046 3' -60.6 NC_005178.1 + 21188 0.67 0.303888
Target:  5'- uGGACGACCAGa-CCgUCGCCgCCacgGACg -3'
miRNA:   3'- gCCUGUUGGUCcaGG-AGCGG-GGg--CUG- -5'
23046 3' -60.6 NC_005178.1 + 31169 0.67 0.29651
Target:  5'- uGGGCGagccggACCuGGUCCUgGUCaucaCCGGCa -3'
miRNA:   3'- gCCUGU------UGGuCCAGGAgCGGg---GGCUG- -5'
23046 3' -60.6 NC_005178.1 + 18336 0.67 0.282174
Target:  5'- uGGugGACCgcgAGGUCCaggaGCgCCUGGCg -3'
miRNA:   3'- gCCugUUGG---UCCAGGag--CGgGGGCUG- -5'
23046 3' -60.6 NC_005178.1 + 17323 0.69 0.230304
Target:  5'- cCGGACGGCgGGG-CCgaggUCGCCCagcuCGGCa -3'
miRNA:   3'- -GCCUGUUGgUCCaGG----AGCGGGg---GCUG- -5'
23046 3' -60.6 NC_005178.1 + 28952 0.69 0.230304
Target:  5'- aCGGcCAucgccgugcGCCAGGUgacCCUgcgCGCCCCUGGCc -3'
miRNA:   3'- -GCCuGU---------UGGUCCA---GGA---GCGGGGGCUG- -5'
23046 3' -60.6 NC_005178.1 + 11169 0.7 0.196879
Target:  5'- uGGGCuuCCuGGUCCUgUGgCCCCGAa -3'
miRNA:   3'- gCCUGuuGGuCCAGGA-GCgGGGGCUg -5'
23046 3' -60.6 NC_005178.1 + 21584 0.7 0.181808
Target:  5'- aGGACGACCAaaucGGcaucuaCUCGCCCCaGGCg -3'
miRNA:   3'- gCCUGUUGGU----CCag----GAGCGGGGgCUG- -5'
23046 3' -60.6 NC_005178.1 + 8166 0.7 0.177016
Target:  5'- gGGACGACCAGGUCgUUCGCgaaauCCUCGu- -3'
miRNA:   3'- gCCUGUUGGUCCAG-GAGCG-----GGGGCug -5'
23046 3' -60.6 NC_005178.1 + 16684 0.68 0.248112
Target:  5'- uGGGCGAUCAGG-CCggcgcaggcaUCGCCCaacugagCCGGCg -3'
miRNA:   3'- gCCUGUUGGUCCaGG----------AGCGGG-------GGCUG- -5'
23046 3' -60.6 NC_005178.1 + 33912 0.68 0.273154
Target:  5'- aGGACAuCCAGcGUCCcaucgagcccaccuUCGCCCuuGuCa -3'
miRNA:   3'- gCCUGUuGGUC-CAGG--------------AGCGGGggCuG- -5'
23046 3' -60.6 NC_005178.1 + 28638 0.67 0.282174
Target:  5'- gGGAUGGCgGGGaaugCCggcgaCGCCCCCGGu -3'
miRNA:   3'- gCCUGUUGgUCCa---GGa----GCGGGGGCUg -5'
23046 3' -60.6 NC_005178.1 + 21597 0.67 0.303888
Target:  5'- aCGGugG-CCucgaaGUCCUCGUUCUCGACa -3'
miRNA:   3'- -GCCugUuGGuc---CAGGAGCGGGGGCUG- -5'
23046 3' -60.6 NC_005178.1 + 16037 0.67 0.303888
Target:  5'- cCGaACGGCUGGaGUaCCUCGCCCgCGAUg -3'
miRNA:   3'- -GCcUGUUGGUC-CA-GGAGCGGGgGCUG- -5'
23046 3' -60.6 NC_005178.1 + 31239 0.67 0.311406
Target:  5'- cCGGugAugaccaggACCAGGUCCggcUCGCCCaggagccuCCaGACg -3'
miRNA:   3'- -GCCugU--------UGGUCCAGG---AGCGGG--------GG-CUG- -5'
23046 3' -60.6 NC_005178.1 + 33077 0.67 0.311406
Target:  5'- aGGAUguaaaGAUCGGGUCCggcgUGCCgCUCGAUg -3'
miRNA:   3'- gCCUG-----UUGGUCCAGGa---GCGG-GGGCUG- -5'
23046 3' -60.6 NC_005178.1 + 6948 0.66 0.342883
Target:  5'- uGGACGAagaCGGGcggaCgCUCGCCCCaggcCGACa -3'
miRNA:   3'- gCCUGUUg--GUCCa---G-GAGCGGGG----GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.