miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23046 5' -55.5 NC_005178.1 + 37165 0.66 0.600962
Target:  5'- aGGUCGucGGGAUGGAACg-CCAGGUc -3'
miRNA:   3'- gCCAGCc-CCUUGUCUUGaaGGUCCGa -5'
23046 5' -55.5 NC_005178.1 + 27270 0.66 0.568491
Target:  5'- uGGUCGaGGGGcguagacggcccuuuCGGGGCUUUCGGGUc -3'
miRNA:   3'- gCCAGC-CCCUu--------------GUCUUGAAGGUCCGa -5'
23046 5' -55.5 NC_005178.1 + 8908 0.67 0.524493
Target:  5'- gCGGUCGGuGGcguCGGGGCUcacacccggcacgcgCCGGGCg -3'
miRNA:   3'- -GCCAGCC-CCuu-GUCUUGAa--------------GGUCCGa -5'
23046 5' -55.5 NC_005178.1 + 10330 0.68 0.460147
Target:  5'- cCGGgcgCGGaGGGGCGaAGCgcgCCGGGCUg -3'
miRNA:   3'- -GCCa--GCC-CCUUGUcUUGaa-GGUCCGA- -5'
23046 5' -55.5 NC_005178.1 + 23166 0.7 0.338769
Target:  5'- uGGgcgcCGGGGugcCGGAGCUggucagggCCAGGCUg -3'
miRNA:   3'- gCCa---GCCCCuu-GUCUUGAa-------GGUCCGA- -5'
23046 5' -55.5 NC_005178.1 + 21279 0.71 0.313474
Target:  5'- cCGGcCGGGGAGCGGGuuucgguGCcgUCCGuGGCg -3'
miRNA:   3'- -GCCaGCCCCUUGUCU-------UGa-AGGU-CCGa -5'
23046 5' -55.5 NC_005178.1 + 5416 0.75 0.181667
Target:  5'- uGGUCGGGGGcaagagcccccgccaGCAGAugUgggaaguaaUCCGGGCc -3'
miRNA:   3'- gCCAGCCCCU---------------UGUCUugA---------AGGUCCGa -5'
23046 5' -55.5 NC_005178.1 + 24729 1.09 0.000599
Target:  5'- aCGGUCGGGGAACAGAACUUCCAGGCUg -3'
miRNA:   3'- -GCCAGCCCCUUGUCUUGAAGGUCCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.