miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23047 3' -61.5 NC_005178.1 + 8755 0.66 0.314874
Target:  5'- uGCcg-UGGGCGaCUuggccagcguGCGGGCGGCGGuCu -3'
miRNA:   3'- -UGauaGCCCGC-GG----------UGUCCGCCGCCuG- -5'
23047 3' -61.5 NC_005178.1 + 34733 0.66 0.29243
Target:  5'- gGCUGgccaGGGUucagGCUACGGGCgcGGCGGuCg -3'
miRNA:   3'- -UGAUag--CCCG----CGGUGUCCG--CCGCCuG- -5'
23047 3' -61.5 NC_005178.1 + 19888 0.66 0.290979
Target:  5'- ----aUGGGCGCCcuauggaugugcCGGGCuGGCGGAUc -3'
miRNA:   3'- ugauaGCCCGCGGu-----------GUCCG-CCGCCUG- -5'
23047 3' -61.5 NC_005178.1 + 27728 0.66 0.277475
Target:  5'- cGCUGUUGcGCGCCcaugcccACGGcaGCGGCGGcACg -3'
miRNA:   3'- -UGAUAGCcCGCGG-------UGUC--CGCCGCC-UG- -5'
23047 3' -61.5 NC_005178.1 + 32943 0.67 0.244963
Target:  5'- gGCUGguuuacCGGGgGCUACGucgaguGGCaGGUGGACg -3'
miRNA:   3'- -UGAUa-----GCCCgCGGUGU------CCG-CCGCCUG- -5'
23047 3' -61.5 NC_005178.1 + 23362 0.67 0.238729
Target:  5'- -----gGGGCGUCGCaccaGGGCGGCagucGGGCg -3'
miRNA:   3'- ugauagCCCGCGGUG----UCCGCCG----CCUG- -5'
23047 3' -61.5 NC_005178.1 + 3730 0.68 0.22666
Target:  5'- cCUuggCGGcGCGaauCCACAGGCucuGGUGGACg -3'
miRNA:   3'- uGAua-GCC-CGC---GGUGUCCG---CCGCCUG- -5'
23047 3' -61.5 NC_005178.1 + 4106 0.68 0.217381
Target:  5'- aGCUcgCGGGCgaaguagcgguuGCCgaugaacuccaguucGCA-GCGGCGGACg -3'
miRNA:   3'- -UGAuaGCCCG------------CGG---------------UGUcCGCCGCCUG- -5'
23047 3' -61.5 NC_005178.1 + 28307 0.68 0.215112
Target:  5'- aGCUGcCGGG-GCCGCuggaguggcuGGUGGCGGGa -3'
miRNA:   3'- -UGAUaGCCCgCGGUGu---------CCGCCGCCUg -5'
23047 3' -61.5 NC_005178.1 + 7432 0.68 0.204072
Target:  5'- aGCUggCGGGCGUCAUcuGCGGCGa-- -3'
miRNA:   3'- -UGAuaGCCCGCGGUGucCGCCGCcug -5'
23047 3' -61.5 NC_005178.1 + 22267 0.68 0.198738
Target:  5'- cGCcaggCuGGC-CCGcCAGGCGGCGGGCg -3'
miRNA:   3'- -UGaua-GcCCGcGGU-GUCCGCCGCCUG- -5'
23047 3' -61.5 NC_005178.1 + 29049 0.69 0.193526
Target:  5'- uGCUAUCGGuGcCGCC-CAGGCcaggGGCGcGCa -3'
miRNA:   3'- -UGAUAGCC-C-GCGGuGUCCG----CCGCcUG- -5'
23047 3' -61.5 NC_005178.1 + 3025 0.69 0.188435
Target:  5'- cGCgcUCGGGCgGCCGCgAGGaucGCGGGCc -3'
miRNA:   3'- -UGauAGCCCG-CGGUG-UCCgc-CGCCUG- -5'
23047 3' -61.5 NC_005178.1 + 34916 0.69 0.183461
Target:  5'- gGCguccgGUCGGGCGgaauccagcCCGguGGUGGCGG-Cg -3'
miRNA:   3'- -UGa----UAGCCCGC---------GGUguCCGCCGCCuG- -5'
23047 3' -61.5 NC_005178.1 + 3963 0.7 0.155997
Target:  5'- gGCUucGUUGGGgGUCAUGuGGCGGCGG-Cg -3'
miRNA:   3'- -UGA--UAGCCCgCGGUGU-CCGCCGCCuG- -5'
23047 3' -61.5 NC_005178.1 + 34960 0.7 0.155997
Target:  5'- cGCgauaGGGUGCCucgauCAGGCGGCGcACa -3'
miRNA:   3'- -UGauagCCCGCGGu----GUCCGCCGCcUG- -5'
23047 3' -61.5 NC_005178.1 + 3128 0.73 0.091958
Target:  5'- --aGUCGGGaaCGCuCAugucCGGGCGGCGGACc -3'
miRNA:   3'- ugaUAGCCC--GCG-GU----GUCCGCCGCCUG- -5'
23047 3' -61.5 NC_005178.1 + 25053 1.09 0.000144
Target:  5'- uACUAUCGGGCGCCACAGGCGGCGGACg -3'
miRNA:   3'- -UGAUAGCCCGCGGUGUCCGCCGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.