miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23047 5' -59.1 NC_005178.1 + 15583 0.71 0.16331
Target:  5'- gUGGUUGGCgaaCUCuuugGCCAGACCGGCc- -3'
miRNA:   3'- -ACCAACCGac-GGG----UGGUCUGGUCGua -5'
23047 5' -59.1 NC_005178.1 + 17078 0.66 0.361292
Target:  5'- cGGUUGGCguUG-CCAUCAGucgauccgauCCAGCGUg -3'
miRNA:   3'- aCCAACCG--ACgGGUGGUCu---------GGUCGUA- -5'
23047 5' -59.1 NC_005178.1 + 36132 0.66 0.361292
Target:  5'- gUGGUcgcacccGUUGCCCACCAGcggGCCAaGCGg -3'
miRNA:   3'- -ACCAac-----CGACGGGUGGUC---UGGU-CGUa -5'
23047 5' -59.1 NC_005178.1 + 20458 0.66 0.343992
Target:  5'- aGGUUGGUcGCCUgggcguCCAgGGCCGGCu- -3'
miRNA:   3'- aCCAACCGaCGGGu-----GGU-CUGGUCGua -5'
23047 5' -59.1 NC_005178.1 + 29365 0.67 0.311207
Target:  5'- cGGUaGGa-GCCCACCAcGGCgAGCGg -3'
miRNA:   3'- aCCAaCCgaCGGGUGGU-CUGgUCGUa -5'
23047 5' -59.1 NC_005178.1 + 12986 0.67 0.304166
Target:  5'- ---cUGGCgcgccacguccuccaGCCCACCAccGGCCAGCAa -3'
miRNA:   3'- accaACCGa--------------CGGGUGGU--CUGGUCGUa -5'
23047 5' -59.1 NC_005178.1 + 6548 0.68 0.27364
Target:  5'- cGGUgaccUGGCcgaacugGCUCACCAGcuCCGGCAa -3'
miRNA:   3'- aCCA----ACCGa------CGGGUGGUCu-GGUCGUa -5'
23047 5' -59.1 NC_005178.1 + 25557 0.68 0.246274
Target:  5'- cUGG-UGGCUGCCCGCguGG-CGGUGUu -3'
miRNA:   3'- -ACCaACCGACGGGUGguCUgGUCGUA- -5'
23047 5' -59.1 NC_005178.1 + 34890 0.69 0.2153
Target:  5'- cGGUggUGGCggcGCCaCGCCGGuugucGCCGGCAg -3'
miRNA:   3'- aCCA--ACCGa--CGG-GUGGUC-----UGGUCGUa -5'
23047 5' -59.1 NC_005178.1 + 10422 0.71 0.145874
Target:  5'- -----cGCUGCCCACCAGcucgGCCAGCGc -3'
miRNA:   3'- accaacCGACGGGUGGUC----UGGUCGUa -5'
23047 5' -59.1 NC_005178.1 + 9540 0.72 0.137807
Target:  5'- aUGGgUGGCUGCUCAUCAGuACCGGa-- -3'
miRNA:   3'- -ACCaACCGACGGGUGGUC-UGGUCgua -5'
23047 5' -59.1 NC_005178.1 + 14758 0.77 0.053947
Target:  5'- aGG--GGCUGCCCAUCcGGCCAGCAg -3'
miRNA:   3'- aCCaaCCGACGGGUGGuCUGGUCGUa -5'
23047 5' -59.1 NC_005178.1 + 25017 1.05 0.00037
Target:  5'- cUGGUUGGCUGCCCACCAGACCAGCAUc -3'
miRNA:   3'- -ACCAACCGACGGGUGGUCUGGUCGUA- -5'
23047 5' -59.1 NC_005178.1 + 16341 0.71 0.154369
Target:  5'- cUGGgcGGCacGCUCaccaGCCAGACCAGCGa -3'
miRNA:   3'- -ACCaaCCGa-CGGG----UGGUCUGGUCGUa -5'
23047 5' -59.1 NC_005178.1 + 21453 0.65 0.369273
Target:  5'- gUGGUUGaGCaccuuuccgaagaUGCgCCGCUGGAUCGGCGc -3'
miRNA:   3'- -ACCAAC-CG-------------ACG-GGUGGUCUGGUCGUa -5'
23047 5' -59.1 NC_005178.1 + 22271 0.67 0.288214
Target:  5'- ----aGGCUgGCCCGCCAGG-CGGCGg -3'
miRNA:   3'- accaaCCGA-CGGGUGGUCUgGUCGUa -5'
23047 5' -59.1 NC_005178.1 + 17998 0.71 0.158783
Target:  5'- ----cGGCUGCCCAgggugcccagcuCCAGGCUGGCGUg -3'
miRNA:   3'- accaaCCGACGGGU------------GGUCUGGUCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.