miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23048 5' -57.6 NC_005178.1 + 25200 1.07 0.000418
Target:  5'- cUUGCUGGCGGCCCUUUUCUGCCUCGGc -3'
miRNA:   3'- -AACGACCGCCGGGAAAAGACGGAGCC- -5'
23048 5' -57.6 NC_005178.1 + 4991 0.69 0.27364
Target:  5'- -cGCUGGCGGCCag---UU-CCUCGGc -3'
miRNA:   3'- aaCGACCGCCGGgaaaaGAcGGAGCC- -5'
23048 5' -57.6 NC_005178.1 + 9581 0.69 0.280852
Target:  5'- -cGCgccaGGCGGCgCUggcggUCUGUCUUGGu -3'
miRNA:   3'- aaCGa---CCGCCGgGAaa---AGACGGAGCC- -5'
23048 5' -57.6 NC_005178.1 + 12669 0.68 0.319175
Target:  5'- -cGCUGGCGGguggCCUgg-UUGCCUgCGGc -3'
miRNA:   3'- aaCGACCGCCg---GGAaaaGACGGA-GCC- -5'
23048 5' -57.6 NC_005178.1 + 16622 0.67 0.370167
Target:  5'- gUUGCcaUGGCGGCCagg-UCgGCC-CGGu -3'
miRNA:   3'- -AACG--ACCGCCGGgaaaAGaCGGaGCC- -5'
23048 5' -57.6 NC_005178.1 + 17109 0.67 0.37919
Target:  5'- -cGCaUGGCgaagauGGCCCgcagaUCgGCCUCGGu -3'
miRNA:   3'- aaCG-ACCG------CCGGGaaa--AGaCGGAGCC- -5'
23048 5' -57.6 NC_005178.1 + 20431 0.66 0.435326
Target:  5'- -gGCUucagGGCGGUCagggccgcaauggccUCUGCCUCGGu -3'
miRNA:   3'- aaCGA----CCGCCGGgaaa-----------AGACGGAGCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.