miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23049 3' -57.9 NC_005178.1 + 31508 0.66 0.435501
Target:  5'- uCGACUuCCGCGacggcGGUCUGGCGaUGCUg -3'
miRNA:   3'- -GUUGAcGGCGUa----CCGGACCGCcAUGA- -5'
23049 3' -57.9 NC_005178.1 + 36112 0.68 0.335206
Target:  5'- ---aUGCCGCccagguUGGgCUGGCgGGUGCa -3'
miRNA:   3'- guugACGGCGu-----ACCgGACCG-CCAUGa -5'
23049 3' -57.9 NC_005178.1 + 21096 0.68 0.32697
Target:  5'- uCAGCgcgGCCcagGUAggucaGGCCggUGGCGGUGCUg -3'
miRNA:   3'- -GUUGa--CGG---CGUa----CCGG--ACCGCCAUGA- -5'
23049 3' -57.9 NC_005178.1 + 28306 0.68 0.310949
Target:  5'- gAGCUGCCGgGgccgcuggagUGGCUggUGGCGGgagugGCUg -3'
miRNA:   3'- gUUGACGGCgU----------ACCGG--ACCGCCa----UGA- -5'
23049 3' -57.9 NC_005178.1 + 26339 0.68 0.310949
Target:  5'- gAACgGCacucaGUAUgaGGCCgUGGCGGUACUg -3'
miRNA:   3'- gUUGaCGg----CGUA--CCGG-ACCGCCAUGA- -5'
23049 3' -57.9 NC_005178.1 + 24884 0.68 0.303166
Target:  5'- uGAUUGCCGUgagcuGUGGCaaGGCGGaugACUg -3'
miRNA:   3'- gUUGACGGCG-----UACCGgaCCGCCa--UGA- -5'
23049 3' -57.9 NC_005178.1 + 33901 0.69 0.280717
Target:  5'- --cCUGCCGC---GCCUGGCGGcgaUGCUc -3'
miRNA:   3'- guuGACGGCGuacCGGACCGCC---AUGA- -5'
23049 3' -57.9 NC_005178.1 + 12437 0.69 0.266498
Target:  5'- gAGCcaagGCCGCcgguaGUGGCCUGGgCGGcACg -3'
miRNA:   3'- gUUGa---CGGCG-----UACCGGACC-GCCaUGa -5'
23049 3' -57.9 NC_005178.1 + 16657 0.7 0.233502
Target:  5'- -cGCUGCCaGCcaAUGGCgaGGCGGUcCUg -3'
miRNA:   3'- guUGACGG-CG--UACCGgaCCGCCAuGA- -5'
23049 3' -57.9 NC_005178.1 + 16266 0.72 0.187907
Target:  5'- -cGCUGCgGCAUGGCCgaGGcCGGUcaccGCUc -3'
miRNA:   3'- guUGACGgCGUACCGGa-CC-GCCA----UGA- -5'
23049 3' -57.9 NC_005178.1 + 18092 0.72 0.172933
Target:  5'- --cCUGCCGCAgcGCCUGGCccagcccgccauGGUGCUg -3'
miRNA:   3'- guuGACGGCGUacCGGACCG------------CCAUGA- -5'
23049 3' -57.9 NC_005178.1 + 16050 0.72 0.172933
Target:  5'- gGGCUGuuCCGCGugcUGGCCUGGCcGUACc -3'
miRNA:   3'- gUUGAC--GGCGU---ACCGGACCGcCAUGa -5'
23049 3' -57.9 NC_005178.1 + 3793 0.72 0.172933
Target:  5'- uCAGCUugaaggugGCCaGCuUGGCCUGGCGGUcCa -3'
miRNA:   3'- -GUUGA--------CGG-CGuACCGGACCGCCAuGa -5'
23049 3' -57.9 NC_005178.1 + 22937 0.75 0.097791
Target:  5'- cCAGCUGCCGC-UGGCCcagugccuGUGGUGCUg -3'
miRNA:   3'- -GUUGACGGCGuACCGGac------CGCCAUGA- -5'
23049 3' -57.9 NC_005178.1 + 25936 1.07 0.000356
Target:  5'- gCAACUGCCGCAUGGCCUGGCGGUACUg -3'
miRNA:   3'- -GUUGACGGCGUACCGGACCGCCAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.