miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 28384 0.7 0.094859
Target:  5'- -aGCCACuCCCGCcaccagccacuccAGCGGCC-CCGgCa -3'
miRNA:   3'- cgCGGUGcGGGCG-------------UCGCCGGuGGCgG- -5'
23050 3' -65.2 NC_005178.1 + 28290 0.67 0.158413
Target:  5'- aGCgGCCugGauaGCGGCGGC-GCCGCUc -3'
miRNA:   3'- -CG-CGGugCgggCGUCGCCGgUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28230 0.76 0.033672
Target:  5'- gGCGCCGcCGCuauccaggccgcugCCGCcucGCuGGCCGCCGCCa -3'
miRNA:   3'- -CGCGGU-GCG--------------GGCGu--CG-CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28209 0.69 0.111963
Target:  5'- gGCGCCGaccgucaGCCCcugGGCGccgccaucgguGCCACCGCCc -3'
miRNA:   3'- -CGCGGUg------CGGGcg-UCGC-----------CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28167 0.68 0.138777
Target:  5'- gGCGCCuCGgcuguaUCCGCcuCGGCCGgCGCCc -3'
miRNA:   3'- -CGCGGuGC------GGGCGucGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 27720 0.76 0.033958
Target:  5'- cGCGcCCAUGCCCacgGCAGCGGCgGCaCGUUg -3'
miRNA:   3'- -CGC-GGUGCGGG---CGUCGCCGgUG-GCGG- -5'
23050 3' -65.2 NC_005178.1 + 27429 0.66 0.215501
Target:  5'- gGCGCUGCGCgacaaaaguuccaCCaCGGCGGCCcAgCGCa -3'
miRNA:   3'- -CGCGGUGCG-------------GGcGUCGCCGG-UgGCGg -5'
23050 3' -65.2 NC_005178.1 + 27114 0.67 0.157167
Target:  5'- gGCgGCUaacccgaacgacgaACGCCUGCGGcCGGaaaauaUCGCCGCCg -3'
miRNA:   3'- -CG-CGG--------------UGCGGGCGUC-GCC------GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 26385 0.68 0.135128
Target:  5'- aGUGCCGuuCGCCC-UGGCGaGUgaCGCCGCCa -3'
miRNA:   3'- -CGCGGU--GCGGGcGUCGC-CG--GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 26296 0.68 0.150274
Target:  5'- cCGCCGggcaacUGUCCGCcauGGCGGCguCACuCGCCa -3'
miRNA:   3'- cGCGGU------GCGGGCG---UCGCCG--GUG-GCGG- -5'
23050 3' -65.2 NC_005178.1 + 26249 1.12 3.8e-05
Target:  5'- aGCGCCACGCCCGCAGCGGCCACCGCCg -3'
miRNA:   3'- -CGCGGUGCGGGCGUCGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 26166 0.67 0.180524
Target:  5'- gGCGUugUugGCCgaCGCuGCGGCagcguCCGCCc -3'
miRNA:   3'- -CGCG--GugCGG--GCGuCGCCGgu---GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 26163 0.72 0.076155
Target:  5'- aGCGCCuuuaucaucaucgGCG-CgGCGGUGGCCGCUGCg -3'
miRNA:   3'- -CGCGG-------------UGCgGgCGUCGCCGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 26086 0.69 0.128092
Target:  5'- uCGCCcgaggggcggACGCugCCGCAGCgucGGCCAacaaCGCCa -3'
miRNA:   3'- cGCGG----------UGCG--GGCGUCG---CCGGUg---GCGG- -5'
23050 3' -65.2 NC_005178.1 + 25841 0.72 0.071072
Target:  5'- aCGCCAUGgCCGUGGcCGGCauuucggcaggucagUACCGCCa -3'
miRNA:   3'- cGCGGUGCgGGCGUC-GCCG---------------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25617 0.75 0.043749
Target:  5'- aGCgGCCGaGgCUGCGGCGaaaGCCACCGCCg -3'
miRNA:   3'- -CG-CGGUgCgGGCGUCGC---CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25574 0.67 0.166948
Target:  5'- aCGCCgagcGCGCCCGCgaacAGCaGGUUGCaGCCg -3'
miRNA:   3'- cGCGG----UGCGGGCG----UCG-CCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 25500 0.66 0.205327
Target:  5'- aGCGCUu--CCCGCuguugcagggaGGCGGCgacCAUCGCCu -3'
miRNA:   3'- -CGCGGugcGGGCG-----------UCGCCG---GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25458 0.67 0.158413
Target:  5'- aGCGCUggacGCGCUgGCGGaaaguucggauCGGaugaaCACCGCCa -3'
miRNA:   3'- -CGCGG----UGCGGgCGUC-----------GCCg----GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25218 0.69 0.121397
Target:  5'- cCGCCAUcaGCUCGCgggcuugcuGGCGGCCcuuuuCUGCCu -3'
miRNA:   3'- cGCGGUG--CGGGCG---------UCGCCGGu----GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.