miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 24331 0.68 0.146349
Target:  5'- gGCGCCAUcgGCUCGCAG-GGCguaaUACUGCg -3'
miRNA:   3'- -CGCGGUG--CGGGCGUCgCCG----GUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 12436 0.66 0.195069
Target:  5'- -aGCCAaggcCGCCgGUAGUGGCCuggGCgGCa -3'
miRNA:   3'- cgCGGU----GCGGgCGUCGCCGG---UGgCGg -5'
23050 3' -65.2 NC_005178.1 + 10927 0.67 0.180524
Target:  5'- gGCGUCcucgacguGCGCCCGaacaAGUGGCUGCCaGUUg -3'
miRNA:   3'- -CGCGG--------UGCGGGCg---UCGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 26166 0.67 0.180524
Target:  5'- gGCGUugUugGCCgaCGCuGCGGCagcguCCGCCc -3'
miRNA:   3'- -CGCG--GugCGG--GCGuCGCCGgu---GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 20491 0.67 0.180524
Target:  5'- uGgGCCAgGCCgaggguuucgCGCAGCuuGGCCAgguuggUCGCCu -3'
miRNA:   3'- -CgCGGUgCGG----------GCGUCG--CCGGU------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 9729 0.67 0.180524
Target:  5'- cCGCCucgGCCgGCucGGCGaaGCCACCgGCCg -3'
miRNA:   3'- cGCGGug-CGGgCG--UCGC--CGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 11835 0.67 0.185262
Target:  5'- -gGCCG-GCCUGCGGCGGaacccCCAUgGCUc -3'
miRNA:   3'- cgCGGUgCGGGCGUCGCC-----GGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 1772 0.66 0.188644
Target:  5'- aGUGCauCGCGgCCGUAagccacGCGGCCGCCacgcacaucgaccaGCCa -3'
miRNA:   3'- -CGCG--GUGCgGGCGU------CGCCGGUGG--------------CGG- -5'
23050 3' -65.2 NC_005178.1 + 15462 0.66 0.19011
Target:  5'- -aGUCGcCGCCCau-GCGGCCACCuaCg -3'
miRNA:   3'- cgCGGU-GCGGGcguCGCCGGUGGcgG- -5'
23050 3' -65.2 NC_005178.1 + 5904 0.66 0.19011
Target:  5'- aGCgGCCugGCUugagggCGUaauGGCGGCCGuuGCg -3'
miRNA:   3'- -CG-CGGugCGG------GCG---UCGCCGGUggCGg -5'
23050 3' -65.2 NC_005178.1 + 29678 0.66 0.194568
Target:  5'- gGCGCCGucgaaauCGCCCagGUAGCGGCguCCcUCg -3'
miRNA:   3'- -CGCGGU-------GCGGG--CGUCGCCGguGGcGG- -5'
23050 3' -65.2 NC_005178.1 + 37149 0.66 0.200141
Target:  5'- aCGCCAgguCGCCgaccgggaCGcCAGCGaguGCUGCCGCCu -3'
miRNA:   3'- cGCGGU---GCGG--------GC-GUCGC---CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 24198 0.66 0.216048
Target:  5'- aGUaCCuCGCCCGUcaCGGagcCCGCCGCCu -3'
miRNA:   3'- -CGcGGuGCGGGCGucGCC---GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 18245 0.66 0.210629
Target:  5'- aCGCCAC-CgCGCAGCcGa-ACCGCCa -3'
miRNA:   3'- cGCGGUGcGgGCGUCGcCggUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3059 0.66 0.210093
Target:  5'- aGCGCUccaggcuGCGCaCGCucGGCaGGCCAuCCGCg -3'
miRNA:   3'- -CGCGG-------UGCGgGCG--UCG-CCGGU-GGCGg -5'
23050 3' -65.2 NC_005178.1 + 25500 0.66 0.205327
Target:  5'- aGCGCUu--CCCGCuguugcagggaGGCGGCgacCAUCGCCu -3'
miRNA:   3'- -CGCGGugcGGGCG-----------UCGCCG---GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 11186 0.66 0.199629
Target:  5'- cGCGCUgauguggAUGCCaaacauuuucaGCAGCGcGgCGCUGCCg -3'
miRNA:   3'- -CGCGG-------UGCGGg----------CGUCGC-CgGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 17112 0.66 0.195069
Target:  5'- -gGCCGCauggcgaagaugGCCCGCAGauCGGCCucgguuggcGuuGCCa -3'
miRNA:   3'- cgCGGUG------------CGGGCGUC--GCCGG---------UggCGG- -5'
23050 3' -65.2 NC_005178.1 + 8775 0.66 0.199629
Target:  5'- uCGCCugGguguuccuCCCGCAGCucgaugaGGCCAUCGa- -3'
miRNA:   3'- cGCGGugC--------GGGCGUCG-------CCGGUGGCgg -5'
23050 3' -65.2 NC_005178.1 + 34717 0.68 0.150274
Target:  5'- -gGCUACGggCGCGGCGGUCGaacaCGCCc -3'
miRNA:   3'- cgCGGUGCggGCGUCGCCGGUg---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.