miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 21079 0.7 0.108973
Target:  5'- -gGUCAgGCCgGUGGCGGUgcUGCCGCCc -3'
miRNA:   3'- cgCGGUgCGGgCGUCGCCG--GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16425 0.69 0.111058
Target:  5'- gGCGCCGcCGCCCGacucGCuGGUCuggcuggugagcguGCCGCCc -3'
miRNA:   3'- -CGCGGU-GCGGGCgu--CG-CCGG--------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3131 0.69 0.111963
Target:  5'- aGCGCaGCGCCCGC-GCuGCCcaugcACUGCUg -3'
miRNA:   3'- -CGCGgUGCGGGCGuCGcCGG-----UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 30338 0.69 0.111963
Target:  5'- -aGCCGCaGCaCGCuGCcGCCGCCGCUg -3'
miRNA:   3'- cgCGGUG-CGgGCGuCGcCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 17225 0.69 0.111963
Target:  5'- gGCGUgACGCCU----UGGCCACCGUCa -3'
miRNA:   3'- -CGCGgUGCGGGcgucGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 28209 0.69 0.111963
Target:  5'- gGCGCCGaccgucaGCCCcugGGCGccgccaucgguGCCACCGCCc -3'
miRNA:   3'- -CGCGGUg------CGGGcg-UCGC-----------CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 36060 0.69 0.114719
Target:  5'- cCGCUugGCCCGCuGGUGGgcaacgggugcgaCCACgGCUa -3'
miRNA:   3'- cGCGGugCGGGCG-UCGCC-------------GGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 28532 0.69 0.115029
Target:  5'- gGCGCUACaugaCUggGCGGgGGCCGuCCGCCg -3'
miRNA:   3'- -CGCGGUGcg--GG--CGUCgCCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25153 0.69 0.115029
Target:  5'- cCGCCAgcaaGCCCGCgagcugauGGCGGUCAaccauggcuUCGCCg -3'
miRNA:   3'- cGCGGUg---CGGGCG--------UCGCCGGU---------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 30876 0.69 0.115029
Target:  5'- uGCGCCGCGUagaCGcCGGCccaggucgaGGCCgcgACCGCUg -3'
miRNA:   3'- -CGCGGUGCGg--GC-GUCG---------CCGG---UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 1700 0.69 0.118173
Target:  5'- uGCGUgGCGgCCGC-GUGGCUuacgGCCGCg -3'
miRNA:   3'- -CGCGgUGCgGGCGuCGCCGG----UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 31642 0.69 0.118173
Target:  5'- -gGuCCAgGCCgGCGGCGG-UACUGCCu -3'
miRNA:   3'- cgC-GGUgCGGgCGUCGCCgGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25218 0.69 0.121397
Target:  5'- cCGCCAUcaGCUCGCgggcuugcuGGCGGCCcuuuuCUGCCu -3'
miRNA:   3'- cGCGGUG--CGGGCG---------UCGCCGGu----GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 21855 0.69 0.124703
Target:  5'- aGCGCCAUaaCCUGCcuucGCCGCCGCCu -3'
miRNA:   3'- -CGCGGUGc-GGGCGucgcCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 7106 0.69 0.124703
Target:  5'- aGUGCaGCGaguaCCUcCAGCGGCCGgCGCCg -3'
miRNA:   3'- -CGCGgUGC----GGGcGUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 15721 0.69 0.124703
Target:  5'- cCGCCGCGCaacgccucggCCGCAGagaaGGCCGaCGCg -3'
miRNA:   3'- cGCGGUGCG----------GGCGUCg---CCGGUgGCGg -5'
23050 3' -65.2 NC_005178.1 + 21206 0.69 0.12775
Target:  5'- cCGCCACGgacggcaccgaaaCCCGCucccCGGCCgGCCGCa -3'
miRNA:   3'- cGCGGUGC-------------GGGCGuc--GCCGG-UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 26086 0.69 0.128092
Target:  5'- uCGCCcgaggggcggACGCugCCGCAGCgucGGCCAacaaCGCCa -3'
miRNA:   3'- cGCGG----------UGCG--GGCGUCG---CCGGUg---GCGG- -5'
23050 3' -65.2 NC_005178.1 + 36618 0.69 0.131567
Target:  5'- gGCGgauagaacuCCAC-CCCGUAGCgggcaaGGCUACCGCUc -3'
miRNA:   3'- -CGC---------GGUGcGGGCGUCG------CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 30774 0.69 0.131567
Target:  5'- -aGCUGaaccaggacaucCGCCUgGCAGCGGUCGCgGCCu -3'
miRNA:   3'- cgCGGU------------GCGGG-CGUCGCCGGUGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.