miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 12982 0.73 0.057871
Target:  5'- cGCGCCACGUCCucCAGCccaCCACCgGCCa -3'
miRNA:   3'- -CGCGGUGCGGGc-GUCGcc-GGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 13088 0.72 0.06837
Target:  5'- cGCGUUcUGCCCGaaacauCAGCgcuGGCCACCGCUa -3'
miRNA:   3'- -CGCGGuGCGGGC------GUCG---CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13137 0.7 0.106058
Target:  5'- aGCGCCugGCCaGCuucauccgugAGCGGUUcCCGCa -3'
miRNA:   3'- -CGCGGugCGGgCG----------UCGCCGGuGGCGg -5'
23050 3' -65.2 NC_005178.1 + 13179 0.67 0.166948
Target:  5'- gGCGCUggaGCaCCUccauaGCGGUGGCCAgCGCUg -3'
miRNA:   3'- -CGCGG---UGcGGG-----CGUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13672 0.66 0.210629
Target:  5'- aGCGUgagCAUGCuCUGCguaaugucAGUGGCCgccuugauGCCGCCg -3'
miRNA:   3'- -CGCG---GUGCG-GGCG--------UCGCCGG--------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13763 0.67 0.180524
Target:  5'- gGUGCCuACGgCgGCaucaaGGCGGCCACUGaCa -3'
miRNA:   3'- -CGCGG-UGCgGgCG-----UCGCCGGUGGCgG- -5'
23050 3' -65.2 NC_005178.1 + 13811 0.68 0.154295
Target:  5'- uUGCC-CaGCuuGCGGgGGaguuCCGCCGCCa -3'
miRNA:   3'- cGCGGuG-CGggCGUCgCC----GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13885 0.66 0.210629
Target:  5'- aGCGCCGC-CCgGCGuGaacgGGCCAgCGCg -3'
miRNA:   3'- -CGCGGUGcGGgCGU-Cg---CCGGUgGCGg -5'
23050 3' -65.2 NC_005178.1 + 14641 0.75 0.039096
Target:  5'- uCGCCGCGCuggaguucuaCCaGgAGCGcGCCGCCGCCa -3'
miRNA:   3'- cGCGGUGCG----------GG-CgUCGC-CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 15462 0.66 0.19011
Target:  5'- -aGUCGcCGCCCau-GCGGCCACCuaCg -3'
miRNA:   3'- cgCGGU-GCGGGcguCGCCGGUGGcgG- -5'
23050 3' -65.2 NC_005178.1 + 15721 0.69 0.124703
Target:  5'- cCGCCGCGCaacgccucggCCGCAGagaaGGCCGaCGCg -3'
miRNA:   3'- cGCGGUGCG----------GGCGUCg---CCGGUgGCGg -5'
23050 3' -65.2 NC_005178.1 + 16082 0.7 0.103217
Target:  5'- cGCGCCACGUaucccgagCGCGaacGCGGCUugUGCa -3'
miRNA:   3'- -CGCGGUGCGg-------GCGU---CGCCGGugGCGg -5'
23050 3' -65.2 NC_005178.1 + 16215 0.66 0.205327
Target:  5'- -gGCCAUG-CCGCAGCGGgCAuuauCC-CCg -3'
miRNA:   3'- cgCGGUGCgGGCGUCGCCgGU----GGcGG- -5'
23050 3' -65.2 NC_005178.1 + 16263 0.7 0.108973
Target:  5'- uGCGgCAUGgCCGaGGcCGGUCACCGCUc -3'
miRNA:   3'- -CGCgGUGCgGGCgUC-GCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16417 0.7 0.100448
Target:  5'- uGCGCCAUGaCCUacugGCuGCGGaugcccgccagcUCGCCGCCa -3'
miRNA:   3'- -CGCGGUGC-GGG----CGuCGCC------------GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16425 0.69 0.111058
Target:  5'- gGCGCCGcCGCCCGacucGCuGGUCuggcuggugagcguGCCGCCc -3'
miRNA:   3'- -CGCGGU-GCGGGCgu--CG-CCGG--------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 16764 0.72 0.075736
Target:  5'- gGCGCCGgcucaguugggcgaUGCCUGCGcCGGCCugaucgcccaggACCGCCu -3'
miRNA:   3'- -CGCGGU--------------GCGGGCGUcGCCGG------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 17053 0.7 0.103217
Target:  5'- cGgGCCAUcUUCGCcauGCGGCCggagGCCGCCa -3'
miRNA:   3'- -CgCGGUGcGGGCGu--CGCCGG----UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 17112 0.66 0.195069
Target:  5'- -gGCCGCauggcgaagaugGCCCGCAGauCGGCCucgguuggcGuuGCCa -3'
miRNA:   3'- cgCGGUG------------CGGGCGUC--GCCGG---------UggCGG- -5'
23050 3' -65.2 NC_005178.1 + 17142 0.68 0.138777
Target:  5'- cGCGgccacCCAUGCCCGagcgcugaCGGUGGCCAaggcgucaCGCCu -3'
miRNA:   3'- -CGC-----GGUGCGGGC--------GUCGCCGGUg-------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.