miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 25153 0.69 0.115029
Target:  5'- cCGCCAgcaaGCCCGCgagcugauGGCGGUCAaccauggcuUCGCCg -3'
miRNA:   3'- cGCGGUg---CGGGCG--------UCGCCGGU---------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 24589 0.66 0.19011
Target:  5'- gGCGaCCugGgCCGCuuCGGCCGCauuauucaGCUg -3'
miRNA:   3'- -CGC-GGugCgGGCGucGCCGGUGg-------CGG- -5'
23050 3' -65.2 NC_005178.1 + 24331 0.68 0.146349
Target:  5'- gGCGCCAUcgGCUCGCAG-GGCguaaUACUGCg -3'
miRNA:   3'- -CGCGGUG--CGGGCGUCgCCG----GUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 24319 0.67 0.170032
Target:  5'- cUGCCgACGCcggccccgacccagCCGUucaaAGCGGCCuaugaguacGCCGCCa -3'
miRNA:   3'- cGCGG-UGCG--------------GGCG----UCGCCGG---------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 24249 0.67 0.185262
Target:  5'- gGCGCCccuCGaCCCGCAguauuacgcccuGCGaGCCGauggCGCCu -3'
miRNA:   3'- -CGCGGu--GC-GGGCGU------------CGC-CGGUg---GCGG- -5'
23050 3' -65.2 NC_005178.1 + 24198 0.66 0.216048
Target:  5'- aGUaCCuCGCCCGUcaCGGagcCCGCCGCCu -3'
miRNA:   3'- -CGcGGuGCGGGCGucGCC---GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 23536 0.71 0.082714
Target:  5'- gGCGUCACuccgcugGCCCGCAGCccgcaGGCU-UCGCCa -3'
miRNA:   3'- -CGCGGUG-------CGGGCGUCG-----CCGGuGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 23513 0.67 0.16263
Target:  5'- cGCGCCggGCGCCC----UGGCCGUCGCCc -3'
miRNA:   3'- -CGCGG--UGCGGGcgucGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 23478 0.67 0.16263
Target:  5'- -aGCCG-GCCCGCuGCucGGCCgGCUGCUc -3'
miRNA:   3'- cgCGGUgCGGGCGuCG--CCGG-UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 23438 0.68 0.138777
Target:  5'- aCGCCgACGCCCaggGCGaCGGCCAgggCGCCc -3'
miRNA:   3'- cGCGG-UGCGGG---CGUcGCCGGUg--GCGG- -5'
23050 3' -65.2 NC_005178.1 + 22945 0.67 0.180524
Target:  5'- --uCCGCGUCCGCaucGGCgauagccugGGCCacgACCGCCg -3'
miRNA:   3'- cgcGGUGCGGGCG---UCG---------CCGG---UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 22923 0.67 0.180524
Target:  5'- cUG-CACGCCCGCuaccAGCuGCCGCUgGCCc -3'
miRNA:   3'- cGCgGUGCGGGCG----UCGcCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 22852 0.68 0.138777
Target:  5'- cCGCCACGaccaucgauCCgGCGGUcguggcccaGGCUAUCGCCg -3'
miRNA:   3'- cGCGGUGC---------GGgCGUCG---------CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 22254 0.71 0.080692
Target:  5'- uGCGCCAgUGCCgGUGGagccauaGGCCAgCUGCCa -3'
miRNA:   3'- -CGCGGU-GCGGgCGUCg------CCGGU-GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 22146 0.67 0.16263
Target:  5'- gGCGCCgaaGCCCGC-GCuGCUGCCGg- -3'
miRNA:   3'- -CGCGGug-CGGGCGuCGcCGGUGGCgg -5'
23050 3' -65.2 NC_005178.1 + 21855 0.69 0.124703
Target:  5'- aGCGCCAUaaCCUGCcuucGCCGCCGCCu -3'
miRNA:   3'- -CGCGGUGc-GGGCGucgcCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 21782 0.66 0.202201
Target:  5'- aCGCCA-GCCagGCGGCGGCgaaggcagguuauggCGCUGCUc -3'
miRNA:   3'- cGCGGUgCGGg-CGUCGCCG---------------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 21259 0.68 0.154295
Target:  5'- gGUGCC--GUCCGUGGCGGCgACgGUCu -3'
miRNA:   3'- -CGCGGugCGGGCGUCGCCGgUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 21206 0.69 0.12775
Target:  5'- cCGCCACGgacggcaccgaaaCCCGCucccCGGCCgGCCGCa -3'
miRNA:   3'- cGCGGUGC-------------GGGCGuc--GCCGG-UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 21091 0.68 0.154295
Target:  5'- gGCGCCAagguCGUCCGU-GUGcGCCGCCugaacGCCu -3'
miRNA:   3'- -CGCGGU----GCGGGCGuCGC-CGGUGG-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.