miRNA display CGI


Results 61 - 80 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 28940 0.74 0.053224
Target:  5'- --cCCGCGUCCgGCA-CGGCCAUCGCCg -3'
miRNA:   3'- cgcGGUGCGGG-CGUcGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 31750 0.73 0.055811
Target:  5'- aGCGCCugGCCCgagguaaugccgGCgacgaccuacagggGGCGGCCAgUGCUg -3'
miRNA:   3'- -CGCGGugCGGG------------CG--------------UCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3868 0.73 0.057871
Target:  5'- uUGCCGCGCaucguugacCCGaacacCGGCCGCCGCCg -3'
miRNA:   3'- cGCGGUGCG---------GGCguc--GCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 6695 0.73 0.064681
Target:  5'- aGCGCCugGaCCG-GGCGGCCucACUGCUg -3'
miRNA:   3'- -CGCGGugCgGGCgUCGCCGG--UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3758 0.72 0.066501
Target:  5'- cGCGCCGgGCCauCGCcaagGGCGGCaccauGCCGCUg -3'
miRNA:   3'- -CGCGGUgCGG--GCG----UCGCCGg----UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 13088 0.72 0.06837
Target:  5'- cGCGUUcUGCCCGaaacauCAGCgcuGGCCACCGCUa -3'
miRNA:   3'- -CGCGGuGCGGGC------GUCG---CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 25841 0.72 0.071072
Target:  5'- aCGCCAUGgCCGUGGcCGGCauuucggcaggucagUACCGCCa -3'
miRNA:   3'- cGCGGUGCgGGCGUC-GCCG---------------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5166 0.72 0.074286
Target:  5'- gGCGCCGgucuacaGcCCCGgAGUGGCUAUCGCUg -3'
miRNA:   3'- -CGCGGUg------C-GGGCgUCGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 26163 0.72 0.076155
Target:  5'- aGCGCCuuuaucaucaucgGCG-CgGCGGUGGCCGCUGCg -3'
miRNA:   3'- -CGCGG-------------UGCgGgCGUCGCCGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 4932 0.72 0.076365
Target:  5'- uCGCCGaggaacUGgCCGcCAGCGGCCGCCcGCUg -3'
miRNA:   3'- cGCGGU------GCgGGC-GUCGCCGGUGG-CGG- -5'
23050 3' -65.2 NC_005178.1 + 11394 0.71 0.080692
Target:  5'- cCGCCugGUggcugaUCGguGCGGcCCugCGCCu -3'
miRNA:   3'- cGCGGugCG------GGCguCGCC-GGugGCGG- -5'
23050 3' -65.2 NC_005178.1 + 23536 0.71 0.082714
Target:  5'- gGCGUCACuccgcugGCCCGCAGCccgcaGGCU-UCGCCa -3'
miRNA:   3'- -CGCGGUG-------CGGGCGUCG-----CCGGuGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 19742 0.71 0.085018
Target:  5'- cCGCCGCGCUCGaccgucgccaccaUGGCGGCaugaagaagaACCGCCu -3'
miRNA:   3'- cGCGGUGCGGGC-------------GUCGCCGg---------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 30774 0.69 0.131567
Target:  5'- -aGCUGaaccaggacaucCGCCUgGCAGCGGUCGCgGCCu -3'
miRNA:   3'- cgCGGU------------GCGGG-CGUCGCCGGUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 1700 0.69 0.118173
Target:  5'- uGCGUgGCGgCCGC-GUGGCUuacgGCCGCg -3'
miRNA:   3'- -CGCGgUGCgGGCGuCGCCGG----UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 7106 0.69 0.124703
Target:  5'- aGUGCaGCGaguaCCUcCAGCGGCCGgCGCCg -3'
miRNA:   3'- -CGCGgUGC----GGGcGUCGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 15721 0.69 0.124703
Target:  5'- cCGCCGCGCaacgccucggCCGCAGagaaGGCCGaCGCg -3'
miRNA:   3'- cGCGGUGCG----------GGCGUCg---CCGGUgGCGg -5'
23050 3' -65.2 NC_005178.1 + 21206 0.69 0.12775
Target:  5'- cCGCCACGgacggcaccgaaaCCCGCucccCGGCCgGCCGCa -3'
miRNA:   3'- cGCGGUGC-------------GGGCGuc--GCCGG-UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 26086 0.69 0.128092
Target:  5'- uCGCCcgaggggcggACGCugCCGCAGCgucGGCCAacaaCGCCa -3'
miRNA:   3'- cGCGG----------UGCG--GGCGUCG---CCGGUg---GCGG- -5'
23050 3' -65.2 NC_005178.1 + 7172 0.68 0.138777
Target:  5'- cGUGCCGCGCCUGUccacGCaacccGCaUACCGCCc -3'
miRNA:   3'- -CGCGGUGCGGGCGu---CGc----CG-GUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.