miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 17582 0.68 0.135128
Target:  5'- gGUGCCGaauCGuUCCGUugacGGCGGCCGCUGUg -3'
miRNA:   3'- -CGCGGU---GC-GGGCG----UCGCCGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 23438 0.68 0.138777
Target:  5'- aCGCCgACGCCCaggGCGaCGGCCAgggCGCCc -3'
miRNA:   3'- cGCGG-UGCGGG---CGUcGCCGGUg--GCGG- -5'
23050 3' -65.2 NC_005178.1 + 7172 0.68 0.138777
Target:  5'- cGUGCCGCGCCUGUccacGCaacccGCaUACCGCCc -3'
miRNA:   3'- -CGCGGUGCGGGCGu---CGc----CG-GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 12109 0.68 0.138777
Target:  5'- cGgGCCugGCCgaugggCGC-GCcGCCugCGCCg -3'
miRNA:   3'- -CgCGGugCGG------GCGuCGcCGGugGCGG- -5'
23050 3' -65.2 NC_005178.1 + 17142 0.68 0.138777
Target:  5'- cGCGgccacCCAUGCCCGagcgcugaCGGUGGCCAaggcgucaCGCCu -3'
miRNA:   3'- -CGC-----GGUGCGGGC--------GUCGCCGGUg-------GCGG- -5'
23050 3' -65.2 NC_005178.1 + 20025 0.68 0.138777
Target:  5'- aGC-CCGCGCCCGCuGCcGGCCGUUuCCu -3'
miRNA:   3'- -CGcGGUGCGGGCGuCG-CCGGUGGcGG- -5'
23050 3' -65.2 NC_005178.1 + 28167 0.68 0.138777
Target:  5'- gGCGCCuCGgcuguaUCCGCcuCGGCCGgCGCCc -3'
miRNA:   3'- -CGCGGuGC------GGGCGucGCCGGUgGCGG- -5'
23050 3' -65.2 NC_005178.1 + 22852 0.68 0.138777
Target:  5'- cCGCCACGaccaucgauCCgGCGGUcguggcccaGGCUAUCGCCg -3'
miRNA:   3'- cGCGGUGC---------GGgCGUCG---------CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 2943 0.68 0.140262
Target:  5'- uCGCUAUgcucaagaugGCCCGCGauccucGCGGCCGCCcgagcgcggauggcuGCCg -3'
miRNA:   3'- cGCGGUG----------CGGGCGU------CGCCGGUGG---------------CGG- -5'
23050 3' -65.2 NC_005178.1 + 30045 0.68 0.142139
Target:  5'- aGCGCCGgGCCauuCAcGCGcuaucaccuguucGCCACCGCUg -3'
miRNA:   3'- -CGCGGUgCGGgc-GU-CGC-------------CGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3489 0.68 0.146349
Target:  5'- aCGUgACGCCUGCaucaagGGCGGCguCCcgGCCa -3'
miRNA:   3'- cGCGgUGCGGGCG------UCGCCGguGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 28592 0.68 0.150274
Target:  5'- cGCGCCaucccuaccACGCCCaaGCA-UGGgCGCCGCUc -3'
miRNA:   3'- -CGCGG---------UGCGGG--CGUcGCCgGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 36547 0.68 0.150274
Target:  5'- -aGCCuuGCCCGCuacggGGUGGaguucuaUACCGCCc -3'
miRNA:   3'- cgCGGugCGGGCG-----UCGCCg------GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 5815 0.68 0.150274
Target:  5'- aCGCCGgauaccUGaCCCGCAaCGGCCGCCauuacGCCc -3'
miRNA:   3'- cGCGGU------GC-GGGCGUcGCCGGUGG-----CGG- -5'
23050 3' -65.2 NC_005178.1 + 26296 0.68 0.150274
Target:  5'- cCGCCGggcaacUGUCCGCcauGGCGGCguCACuCGCCa -3'
miRNA:   3'- cGCGGU------GCGGGCG---UCGCCG--GUG-GCGG- -5'
23050 3' -65.2 NC_005178.1 + 13811 0.68 0.154295
Target:  5'- uUGCC-CaGCuuGCGGgGGaguuCCGCCGCCa -3'
miRNA:   3'- cGCGGuG-CGggCGUCgCC----GGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 3566 0.68 0.154295
Target:  5'- uGCGCgACGag-GCGGuCGGCCuuauggGCCGCCu -3'
miRNA:   3'- -CGCGgUGCgggCGUC-GCCGG------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 21091 0.68 0.154295
Target:  5'- gGCGCCAagguCGUCCGU-GUGcGCCGCCugaacGCCu -3'
miRNA:   3'- -CGCGGU----GCGGGCGuCGC-CGGUGG-----CGG- -5'
23050 3' -65.2 NC_005178.1 + 26385 0.68 0.135128
Target:  5'- aGUGCCGuuCGCCC-UGGCGaGUgaCGCCGCCa -3'
miRNA:   3'- -CGCGGU--GCGGGcGUCGC-CG--GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 2814 0.68 0.142517
Target:  5'- uGCGucuCCugGCggaCCGCcuuGGUGGCCACCucGCCc -3'
miRNA:   3'- -CGC---GGugCG---GGCG---UCGCCGGUGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.