miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 3' -65.2 NC_005178.1 + 17225 0.69 0.111963
Target:  5'- gGCGUgACGCCU----UGGCCACCGUCa -3'
miRNA:   3'- -CGCGgUGCGGGcgucGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 17582 0.68 0.135128
Target:  5'- gGUGCCGaauCGuUCCGUugacGGCGGCCGCUGUg -3'
miRNA:   3'- -CGCGGU---GC-GGGCG----UCGCCGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 17666 0.73 0.062909
Target:  5'- -aGaCCACGgCgaCGcCAGCGGCCGCCGUCa -3'
miRNA:   3'- cgC-GGUGCgG--GC-GUCGCCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 17726 0.67 0.180524
Target:  5'- uUGuCUACGCCCGUcucGaCGGUCACCugGCCg -3'
miRNA:   3'- cGC-GGUGCGGGCGu--C-GCCGGUGG--CGG- -5'
23050 3' -65.2 NC_005178.1 + 18245 0.66 0.210629
Target:  5'- aCGCCAC-CgCGCAGCcGa-ACCGCCa -3'
miRNA:   3'- cGCGGUGcGgGCGUCGcCggUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 18357 0.66 0.209026
Target:  5'- aGCGCCugG-CgGCAcucuacGCGGCUguaaccgacacccuGCCGCUg -3'
miRNA:   3'- -CGCGGugCgGgCGU------CGCCGG--------------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 18451 0.66 0.216597
Target:  5'- aUGCCGCGCau-CAGCGGCagggugucgguuacaGCCGCg -3'
miRNA:   3'- cGCGGUGCGggcGUCGCCGg--------------UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 18563 0.68 0.154295
Target:  5'- cGCGCCGCGCCC-Cuuc-GCCGCuCGCg -3'
miRNA:   3'- -CGCGGUGCGGGcGucgcCGGUG-GCGg -5'
23050 3' -65.2 NC_005178.1 + 19742 0.71 0.085018
Target:  5'- cCGCCGCGCUCGaccgucgccaccaUGGCGGCaugaagaagaACCGCCu -3'
miRNA:   3'- cGCGGUGCGGGC-------------GUCGCCGg---------UGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 19904 0.66 0.188158
Target:  5'- uGUGCCGgGCUgGCGGaucgaugccgccaGuGCCGCCGCa -3'
miRNA:   3'- -CGCGGUgCGGgCGUCg------------C-CGGUGGCGg -5'
23050 3' -65.2 NC_005178.1 + 19992 0.67 0.174525
Target:  5'- cGCGCU-CGaucaCUGCGGCGGCacuggcggcaucgauCCGCCa -3'
miRNA:   3'- -CGCGGuGCg---GGCGUCGCCGgu-------------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 20025 0.68 0.138777
Target:  5'- aGC-CCGCGCCCGCuGCcGGCCGUUuCCu -3'
miRNA:   3'- -CGcGGUGCGGGCGuCG-CCGGUGGcGG- -5'
23050 3' -65.2 NC_005178.1 + 20481 0.74 0.051757
Target:  5'- cCGCCAcCGCCCaGCugaaGGUCGCCGCCc -3'
miRNA:   3'- cGCGGU-GCGGG-CGucg-CCGGUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 20491 0.67 0.180524
Target:  5'- uGgGCCAgGCCgaggguuucgCGCAGCuuGGCCAgguuggUCGCCu -3'
miRNA:   3'- -CgCGGUgCGG----------GCGUCG--CCGGU------GGCGG- -5'
23050 3' -65.2 NC_005178.1 + 20996 0.7 0.108973
Target:  5'- aCGCUACcggGUUCGCcgugGGCGGCagCACCGCCa -3'
miRNA:   3'- cGCGGUG---CGGGCG----UCGCCG--GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 21079 0.7 0.108973
Target:  5'- -gGUCAgGCCgGUGGCGGUgcUGCCGCCc -3'
miRNA:   3'- cgCGGUgCGGgCGUCGCCG--GUGGCGG- -5'
23050 3' -65.2 NC_005178.1 + 21091 0.68 0.154295
Target:  5'- gGCGCCAagguCGUCCGU-GUGcGCCGCCugaacGCCu -3'
miRNA:   3'- -CGCGGU----GCGGGCGuCGC-CGGUGG-----CGG- -5'
23050 3' -65.2 NC_005178.1 + 21206 0.69 0.12775
Target:  5'- cCGCCACGgacggcaccgaaaCCCGCucccCGGCCgGCCGCa -3'
miRNA:   3'- cGCGGUGC-------------GGGCGuc--GCCGG-UGGCGg -5'
23050 3' -65.2 NC_005178.1 + 21259 0.68 0.154295
Target:  5'- gGUGCC--GUCCGUGGCGGCgACgGUCu -3'
miRNA:   3'- -CGCGGugCGGGCGUCGCCGgUGgCGG- -5'
23050 3' -65.2 NC_005178.1 + 21782 0.66 0.202201
Target:  5'- aCGCCA-GCCagGCGGCGGCgaaggcagguuauggCGCUGCUc -3'
miRNA:   3'- cGCGGUgCGGg-CGUCGCCG---------------GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.