miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23050 5' -53.9 NC_005178.1 + 12301 0.73 0.251789
Target:  5'- cUGGUGAucGCGCUGCCUGCcgcuuUCCuGCUg -3'
miRNA:   3'- uACUAUUucCGCGAUGGACG-----AGG-CGA- -5'
23050 5' -53.9 NC_005178.1 + 16032 0.67 0.551479
Target:  5'- -gGAUAcguGGCGCguagcgGgCUGUUCCGCg -3'
miRNA:   3'- uaCUAUuu-CCGCGa-----UgGACGAGGCGa -5'
23050 5' -53.9 NC_005178.1 + 26969 0.67 0.551479
Target:  5'- ----aGAAGGCGC-GCCUGgaUCGCUa -3'
miRNA:   3'- uacuaUUUCCGCGaUGGACgaGGCGA- -5'
23050 5' -53.9 NC_005178.1 + 12119 0.66 0.644364
Target:  5'- -cGAU--GGGCGCgccGCCUGCgccgaCGCa -3'
miRNA:   3'- uaCUAuuUCCGCGa--UGGACGag---GCGa -5'
23050 5' -53.9 NC_005178.1 + 13549 0.68 0.517562
Target:  5'- -gGAgAAAGaGCGCUACCaGCUCCa-- -3'
miRNA:   3'- uaCUaUUUC-CGCGAUGGaCGAGGcga -5'
23050 5' -53.9 NC_005178.1 + 26628 0.68 0.517562
Target:  5'- cUGAUcGAGGGCgGCUAUCUGCU-CGUa -3'
miRNA:   3'- uACUA-UUUCCG-CGAUGGACGAgGCGa -5'
23050 5' -53.9 NC_005178.1 + 7499 0.68 0.495418
Target:  5'- gGUGAUGuaacGGGUGCUGCCggccgagGCgUCgCGCUg -3'
miRNA:   3'- -UACUAUu---UCCGCGAUGGa------CG-AG-GCGA- -5'
23050 5' -53.9 NC_005178.1 + 24300 0.69 0.452498
Target:  5'- -gGGUcgAGGGGCGCcgGgCUGCUCgCGCUg -3'
miRNA:   3'- uaCUA--UUUCCGCGa-UgGACGAG-GCGA- -5'
23050 5' -53.9 NC_005178.1 + 25588 0.7 0.382616
Target:  5'- -cGAUugcgcacGGGCGCUuuCCUGCcaUCCGCUg -3'
miRNA:   3'- uaCUAuu-----UCCGCGAu-GGACG--AGGCGA- -5'
23050 5' -53.9 NC_005178.1 + 26214 1.07 0.000922
Target:  5'- gAUGAUAAAGGCGCUACCUGCUCCGCUg -3'
miRNA:   3'- -UACUAUUUCCGCGAUGGACGAGGCGA- -5'
23050 5' -53.9 NC_005178.1 + 19892 0.66 0.609315
Target:  5'- uUGAauccAGGCGCUGCCgucCUCCaGCUu -3'
miRNA:   3'- uACUauu-UCCGCGAUGGac-GAGG-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.