miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23052 3' -53 NC_005178.1 + 29428 0.66 0.761735
Target:  5'- aGGGGCUgcugaugccccggUGCCGGUCGcuaACGucGGa -3'
miRNA:   3'- gCUCCGGa------------ACGGUCAGCag-UGUuuCC- -5'
23052 3' -53 NC_005178.1 + 33578 0.66 0.73802
Target:  5'- uCGAGGCCgacgUGCUGGUCGcgaccggcgacgcgcUCGCGc--- -3'
miRNA:   3'- -GCUCCGGa---ACGGUCAGC---------------AGUGUuucc -5'
23052 3' -53 NC_005178.1 + 16256 0.66 0.722629
Target:  5'- --uGGCCgagGCCGGUCaccgcUCGCAGcAGGg -3'
miRNA:   3'- gcuCCGGaa-CGGUCAGc----AGUGUU-UCC- -5'
23052 3' -53 NC_005178.1 + 22464 0.67 0.70032
Target:  5'- gCGAGuuCUUGCCGGacgaCGUCggcgGCGAGGGu -3'
miRNA:   3'- -GCUCcgGAACGGUCa---GCAG----UGUUUCC- -5'
23052 3' -53 NC_005178.1 + 17790 0.67 0.677725
Target:  5'- cCGAccGGCCcgGUCGGUCGUCuCcAGGGu -3'
miRNA:   3'- -GCU--CCGGaaCGGUCAGCAGuGuUUCC- -5'
23052 3' -53 NC_005178.1 + 11615 0.67 0.666351
Target:  5'- --uGGCCcUGCCAGUUGUUGCGu--- -3'
miRNA:   3'- gcuCCGGaACGGUCAGCAGUGUuucc -5'
23052 3' -53 NC_005178.1 + 3163 0.67 0.666351
Target:  5'- --cGGcCCUUGgUAGaUCGUCAUGAAGGc -3'
miRNA:   3'- gcuCC-GGAACgGUC-AGCAGUGUUUCC- -5'
23052 3' -53 NC_005178.1 + 31548 0.69 0.575067
Target:  5'- uCGAGGCCg-GCCGuGUCG-CACGGAa- -3'
miRNA:   3'- -GCUCCGGaaCGGU-CAGCaGUGUUUcc -5'
23052 3' -53 NC_005178.1 + 26560 0.7 0.530311
Target:  5'- gCGAGGCUUUGaCCGGuUCGUCGgcCAGcuuGGa -3'
miRNA:   3'- -GCUCCGGAAC-GGUC-AGCAGU--GUUu--CC- -5'
23052 3' -53 NC_005178.1 + 9408 0.71 0.455456
Target:  5'- gCGAGcgcGCCgUGCCAGgcacUCGUCGCAGgcgcAGGa -3'
miRNA:   3'- -GCUC---CGGaACGGUC----AGCAGUGUU----UCC- -5'
23052 3' -53 NC_005178.1 + 26509 0.72 0.405628
Target:  5'- cCGAaacaGCCUUGCCGGUCGcuuccugcaUCGCGAuGGa -3'
miRNA:   3'- -GCUc---CGGAACGGUCAGC---------AGUGUUuCC- -5'
23052 3' -53 NC_005178.1 + 28075 1.11 0.000857
Target:  5'- gCGAGGCCUUGCCAGUCGUCACAAAGGu -3'
miRNA:   3'- -GCUCCGGAACGGUCAGCAGUGUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.