Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23052 | 5' | -55.2 | NC_005178.1 | + | 2581 | 0.66 | 0.586404 |
|
Target: 5'- -gCCUCCAGuagucucaugGCgGGcGAucaGGGCGUUACc -3' miRNA: 3'- uaGGAGGUC----------UGgCCuCU---UCCGCAAUG- -5' |
|||||||
| 23052 | 5' | -55.2 | NC_005178.1 | + | 15750 | 0.66 | 0.575066 |
|
Target: 5'- gGUCCagUCCAGGCCGaGGAcAGcGCGcUUGCg -3' miRNA: 3'- -UAGG--AGGUCUGGCcUCU-UC-CGC-AAUG- -5' |
|||||||
| 23052 | 5' | -55.2 | NC_005178.1 | + | 12847 | 0.66 | 0.552553 |
|
Target: 5'- -aCCUCCAGggacuGCCGGucgaGGAcguAGGCGcgGCg -3' miRNA: 3'- uaGGAGGUC-----UGGCC----UCU---UCCGCaaUG- -5' |
|||||||
| 23052 | 5' | -55.2 | NC_005178.1 | + | 7757 | 0.69 | 0.412397 |
|
Target: 5'- gGUCCUCCAGGgCGGAGuccaguccuggugcGAGGCcaaccgUGCc -3' miRNA: 3'- -UAGGAGGUCUgGCCUC--------------UUCCGca----AUG- -5' |
|||||||
| 23052 | 5' | -55.2 | NC_005178.1 | + | 35212 | 0.69 | 0.377426 |
|
Target: 5'- cGUCCUCCAG-CCGGcu--GGCGUUc- -3' miRNA: 3'- -UAGGAGGUCuGGCCucuuCCGCAAug -5' |
|||||||
| 23052 | 5' | -55.2 | NC_005178.1 | + | 13420 | 0.73 | 0.237154 |
|
Target: 5'- cAUCCUCCAG-CCGGGGGacgaAGGCuacUACa -3' miRNA: 3'- -UAGGAGGUCuGGCCUCU----UCCGca-AUG- -5' |
|||||||
| 23052 | 5' | -55.2 | NC_005178.1 | + | 26122 | 0.74 | 0.201169 |
|
Target: 5'- uGUCgUCCAGGCCGucGcuGGCGUUACu -3' miRNA: 3'- -UAGgAGGUCUGGCcuCuuCCGCAAUG- -5' |
|||||||
| 23052 | 5' | -55.2 | NC_005178.1 | + | 28039 | 1.07 | 0.000711 |
|
Target: 5'- cAUCCUCCAGACCGGAGAAGGCGUUACu -3' miRNA: 3'- -UAGGAGGUCUGGCCUCUUCCGCAAUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home