miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23053 5' -55.7 NC_005178.1 + 20625 0.66 0.569683
Target:  5'- aGGucAGCGCCGCGaccuggccCUGgagCUGGguGACAGc -3'
miRNA:   3'- -CC--UCGCGGUGC--------GACa--GACCuuCUGUU- -5'
23053 5' -55.7 NC_005178.1 + 27700 0.66 0.547276
Target:  5'- -cGGCGgCACGUUGaccCUGGAGGGCc- -3'
miRNA:   3'- ccUCGCgGUGCGACa--GACCUUCUGuu -5'
23053 5' -55.7 NC_005178.1 + 10340 0.66 0.514222
Target:  5'- aGGGGCgaagcgcgccggGCUGCGCUGgccgagCUGGuGGGCAGc -3'
miRNA:   3'- -CCUCG------------CGGUGCGACa-----GACCuUCUGUU- -5'
23053 5' -55.7 NC_005178.1 + 3087 0.67 0.491576
Target:  5'- aGGGCGCCACGCUcggccugGUCcaGGAAG-CGc -3'
miRNA:   3'- cCUCGCGGUGCGA-------CAGa-CCUUCuGUu -5'
23053 5' -55.7 NC_005178.1 + 11104 0.67 0.482011
Target:  5'- cGGcAGCGCCGCGCUG-CUGaaaauguuuGGCAu -3'
miRNA:   3'- -CC-UCGCGGUGCGACaGACcuu------CUGUu -5'
23053 5' -55.7 NC_005178.1 + 27656 0.67 0.471491
Target:  5'- uGGAGCGCguCGCUGUaggccuugaugcCUGGGccuguuucuucAGGCGg -3'
miRNA:   3'- -CCUCGCGguGCGACA------------GACCU-----------UCUGUu -5'
23053 5' -55.7 NC_005178.1 + 25501 0.67 0.471491
Target:  5'- -cAGCGCUuccCGCUGUUgcaGGGAGGCGg -3'
miRNA:   3'- ccUCGCGGu--GCGACAGa--CCUUCUGUu -5'
23053 5' -55.7 NC_005178.1 + 35411 0.67 0.471491
Target:  5'- uGGAGCGUCACGCc--CUGGcuguAGACc- -3'
miRNA:   3'- -CCUCGCGGUGCGacaGACCu---UCUGuu -5'
23053 5' -55.7 NC_005178.1 + 36084 0.68 0.450808
Target:  5'- gGGuGCGaCCACgGCUaUCUGGGAGuACAu -3'
miRNA:   3'- -CCuCGC-GGUG-CGAcAGACCUUC-UGUu -5'
23053 5' -55.7 NC_005178.1 + 14636 0.68 0.411967
Target:  5'- aGGGGuCGCCGCGCUGgaguucuaccaggagCgcgccgccgccaUGGAGGACGg -3'
miRNA:   3'- -CCUC-GCGGUGCGACa--------------G------------ACCUUCUGUu -5'
23053 5' -55.7 NC_005178.1 + 9580 0.68 0.410999
Target:  5'- --uGCGCCGCGCUGcgCUGGgcGGu-- -3'
miRNA:   3'- ccuCGCGGUGCGACa-GACCuuCUguu -5'
23053 5' -55.7 NC_005178.1 + 24294 0.68 0.410999
Target:  5'- aGGGGCGCCgggcugcucGCGCUGUCgGuGAuGACc- -3'
miRNA:   3'- -CCUCGCGG---------UGCGACAGaC-CUuCUGuu -5'
23053 5' -55.7 NC_005178.1 + 7935 0.68 0.401391
Target:  5'- -cGGCGCCGCGCacaGUCacggacGGggGACGGa -3'
miRNA:   3'- ccUCGCGGUGCGa--CAGa-----CCuuCUGUU- -5'
23053 5' -55.7 NC_005178.1 + 26200 0.68 0.401391
Target:  5'- cGGGCGUgGCGCUGgcUCUGGcguaugagaAAGGCAGc -3'
miRNA:   3'- cCUCGCGgUGCGAC--AGACC---------UUCUGUU- -5'
23053 5' -55.7 NC_005178.1 + 26972 0.71 0.297816
Target:  5'- aGGcGCGCCuggauCGCUacCUGGAGGACGAg -3'
miRNA:   3'- -CCuCGCGGu----GCGAcaGACCUUCUGUU- -5'
23053 5' -55.7 NC_005178.1 + 29769 1.08 0.000538
Target:  5'- cGGAGCGCCACGCUGUCUGGAAGACAAc -3'
miRNA:   3'- -CCUCGCGGUGCGACAGACCUUCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.