Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23053 | 5' | -55.7 | NC_005178.1 | + | 20625 | 0.66 | 0.569683 |
Target: 5'- aGGucAGCGCCGCGaccuggccCUGgagCUGGguGACAGc -3' miRNA: 3'- -CC--UCGCGGUGC--------GACa--GACCuuCUGUU- -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 27700 | 0.66 | 0.547276 |
Target: 5'- -cGGCGgCACGUUGaccCUGGAGGGCc- -3' miRNA: 3'- ccUCGCgGUGCGACa--GACCUUCUGuu -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 10340 | 0.66 | 0.514222 |
Target: 5'- aGGGGCgaagcgcgccggGCUGCGCUGgccgagCUGGuGGGCAGc -3' miRNA: 3'- -CCUCG------------CGGUGCGACa-----GACCuUCUGUU- -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 3087 | 0.67 | 0.491576 |
Target: 5'- aGGGCGCCACGCUcggccugGUCcaGGAAG-CGc -3' miRNA: 3'- cCUCGCGGUGCGA-------CAGa-CCUUCuGUu -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 11104 | 0.67 | 0.482011 |
Target: 5'- cGGcAGCGCCGCGCUG-CUGaaaauguuuGGCAu -3' miRNA: 3'- -CC-UCGCGGUGCGACaGACcuu------CUGUu -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 25501 | 0.67 | 0.471491 |
Target: 5'- -cAGCGCUuccCGCUGUUgcaGGGAGGCGg -3' miRNA: 3'- ccUCGCGGu--GCGACAGa--CCUUCUGUu -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 35411 | 0.67 | 0.471491 |
Target: 5'- uGGAGCGUCACGCc--CUGGcuguAGACc- -3' miRNA: 3'- -CCUCGCGGUGCGacaGACCu---UCUGuu -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 27656 | 0.67 | 0.471491 |
Target: 5'- uGGAGCGCguCGCUGUaggccuugaugcCUGGGccuguuucuucAGGCGg -3' miRNA: 3'- -CCUCGCGguGCGACA------------GACCU-----------UCUGUu -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 36084 | 0.68 | 0.450808 |
Target: 5'- gGGuGCGaCCACgGCUaUCUGGGAGuACAu -3' miRNA: 3'- -CCuCGC-GGUG-CGAcAGACCUUC-UGUu -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 14636 | 0.68 | 0.411967 |
Target: 5'- aGGGGuCGCCGCGCUGgaguucuaccaggagCgcgccgccgccaUGGAGGACGg -3' miRNA: 3'- -CCUC-GCGGUGCGACa--------------G------------ACCUUCUGUu -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 9580 | 0.68 | 0.410999 |
Target: 5'- --uGCGCCGCGCUGcgCUGGgcGGu-- -3' miRNA: 3'- ccuCGCGGUGCGACa-GACCuuCUguu -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 24294 | 0.68 | 0.410999 |
Target: 5'- aGGGGCGCCgggcugcucGCGCUGUCgGuGAuGACc- -3' miRNA: 3'- -CCUCGCGG---------UGCGACAGaC-CUuCUGuu -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 26200 | 0.68 | 0.401391 |
Target: 5'- cGGGCGUgGCGCUGgcUCUGGcguaugagaAAGGCAGc -3' miRNA: 3'- cCUCGCGgUGCGAC--AGACC---------UUCUGUU- -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 7935 | 0.68 | 0.401391 |
Target: 5'- -cGGCGCCGCGCacaGUCacggacGGggGACGGa -3' miRNA: 3'- ccUCGCGGUGCGa--CAGa-----CCuuCUGUU- -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 26972 | 0.71 | 0.297816 |
Target: 5'- aGGcGCGCCuggauCGCUacCUGGAGGACGAg -3' miRNA: 3'- -CCuCGCGGu----GCGAcaGACCUUCUGUU- -5' |
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23053 | 5' | -55.7 | NC_005178.1 | + | 29769 | 1.08 | 0.000538 |
Target: 5'- cGGAGCGCCACGCUGUCUGGAAGACAAc -3' miRNA: 3'- -CCUCGCGGUGCGACAGACCUUCUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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