miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23054 5' -57.7 NC_005178.1 + 28131 0.66 0.523794
Target:  5'- gGUGGcaccgauggCgGCGcCCaGGGGCUGACGg -3'
miRNA:   3'- aCAUCaaa------GgCGCuGG-CCCCGGCUGC- -5'
23054 5' -57.7 NC_005178.1 + 24397 0.66 0.513249
Target:  5'- -aUAGg--CCGCuuugaacggcugGGUCGGGGCCGGCGu -3'
miRNA:   3'- acAUCaaaGGCG------------CUGGCCCCGGCUGC- -5'
23054 5' -57.7 NC_005178.1 + 16965 0.66 0.5122
Target:  5'- cGUuacugUUCGUGGCCgacaccuGGGGCCGGCu -3'
miRNA:   3'- aCAucaa-AGGCGCUGG-------CCCCGGCUGc -5'
23054 5' -57.7 NC_005178.1 + 4068 0.66 0.492429
Target:  5'- cUGgAGgaaUUCCacgGCGACCaGGuGGCCGugGg -3'
miRNA:   3'- -ACaUCa--AAGG---CGCUGG-CC-CCGGCugC- -5'
23054 5' -57.7 NC_005178.1 + 30801 0.66 0.482166
Target:  5'- --cGGUcgcggCCuCGACCuGGGCCGGCGu -3'
miRNA:   3'- acaUCAaa---GGcGCUGGcCCCGGCUGC- -5'
23054 5' -57.7 NC_005178.1 + 22614 0.66 0.482166
Target:  5'- gGUGGccaUCCGUGGCCaGGGGCgGuCc -3'
miRNA:   3'- aCAUCaa-AGGCGCUGG-CCCCGgCuGc -5'
23054 5' -57.7 NC_005178.1 + 12467 0.66 0.472007
Target:  5'- --cAGUcaCCGCcACCGGGGUCGggcACGg -3'
miRNA:   3'- acaUCAaaGGCGcUGGCCCCGGC---UGC- -5'
23054 5' -57.7 NC_005178.1 + 3445 0.68 0.404182
Target:  5'- gGUGGUgaUUUC-CGGCCGgaaGGGCCGGCc -3'
miRNA:   3'- aCAUCA--AAGGcGCUGGC---CCCGGCUGc -5'
23054 5' -57.7 NC_005178.1 + 35846 0.69 0.351185
Target:  5'- aGgcGUUUCCGCaugagccuGACgaUGGGGCCGAa- -3'
miRNA:   3'- aCauCAAAGGCG--------CUG--GCCCCGGCUgc -5'
23054 5' -57.7 NC_005178.1 + 12647 0.7 0.31093
Target:  5'- cUGUAcGgcUCgGCGGCCGGcGcGCUGGCGg -3'
miRNA:   3'- -ACAU-CaaAGgCGCUGGCC-C-CGGCUGC- -5'
23054 5' -57.7 NC_005178.1 + 17313 0.72 0.211467
Target:  5'- aGUGGUUgcgCCG-GACggCGGGGCCGAgGu -3'
miRNA:   3'- aCAUCAAa--GGCgCUG--GCCCCGGCUgC- -5'
23054 5' -57.7 NC_005178.1 + 30437 1.09 0.000414
Target:  5'- cUGUAGUUUCCGCGACCGGGGCCGACGa -3'
miRNA:   3'- -ACAUCAAAGGCGCUGGCCCCGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.