miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 24977 0.67 0.647594
Target:  5'- uCGCuuGGAcggAGCGA--ACgGACCCAGu -3'
miRNA:   3'- -GUGggCCU---UCGUUauUGgCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 17909 0.67 0.658953
Target:  5'- gCGCCUGGcAGGCGuuugugGACCGcuccacgucgcCCCAGGg -3'
miRNA:   3'- -GUGGGCC-UUCGUua----UUGGCu----------GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 21277 0.67 0.658953
Target:  5'- gGCCgGGGAGCGGguuucgguGCCGuCCguGGc -3'
miRNA:   3'- gUGGgCCUUCGUUau------UGGCuGGguCC- -5'
23055 3' -53.5 NC_005178.1 + 22521 0.67 0.670286
Target:  5'- aCACCCaGGAauaacccaccccAGCAGaggGACCGcCCCuGGc -3'
miRNA:   3'- -GUGGG-CCU------------UCGUUa--UUGGCuGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 16724 0.67 0.670286
Target:  5'- gCGCCCuGGuccucGCAucgcugcGCUGGCCCAGGu -3'
miRNA:   3'- -GUGGG-CCuu---CGUuau----UGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 33987 0.67 0.670286
Target:  5'- -cCCCGGAA-----AGCCGGCaCCAGGc -3'
miRNA:   3'- guGGGCCUUcguuaUUGGCUG-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 30885 0.67 0.670286
Target:  5'- --aCCGGcugauGCGccgcGUAgacGCCGGCCCAGGu -3'
miRNA:   3'- gugGGCCuu---CGU----UAU---UGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 33794 0.67 0.674809
Target:  5'- uCGCCCGGAuuGCAcaAACUucaucgacuuucuuGCCCAGGg -3'
miRNA:   3'- -GUGGGCCUu-CGUuaUUGGc-------------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 20806 0.67 0.674809
Target:  5'- aCGCCCGGcgcucuGcuguugggucagggcGGCGAUGggcuugGCCuGGCCCAGGu -3'
miRNA:   3'- -GUGGGCC------U---------------UCGUUAU------UGG-CUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 27211 0.67 0.680453
Target:  5'- gGCCuugcgagCGGcGGCGAUAuuuuCCGGCCgCAGGc -3'
miRNA:   3'- gUGG-------GCCuUCGUUAUu---GGCUGG-GUCC- -5'
23055 3' -53.5 NC_005178.1 + 26910 0.67 0.681581
Target:  5'- aGCgCgGGAAGCAAUucACCGAUgcccuUCAGGa -3'
miRNA:   3'- gUG-GgCCUUCGUUAu-UGGCUG-----GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 30888 0.67 0.681581
Target:  5'- gCGCCCuGGAAGaCAAcuauuacAACCGGCUguGGc -3'
miRNA:   3'- -GUGGG-CCUUC-GUUa------UUGGCUGGguCC- -5'
23055 3' -53.5 NC_005178.1 + 31859 0.66 0.689457
Target:  5'- cCACCuUGGAcaacGGCAgcgcgauuccccgcGUGACCGACgucgCCGGGa -3'
miRNA:   3'- -GUGG-GCCU----UCGU--------------UAUUGGCUG----GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 25750 0.66 0.704006
Target:  5'- gCugCCaGggGuCGAggGAUCGACCCGGa -3'
miRNA:   3'- -GugGGcCuuC-GUUa-UUGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 12413 0.66 0.714006
Target:  5'- -cCCCGGuGGCGGUGACUGAugacaacCCCGa- -3'
miRNA:   3'- guGGGCCuUCGUUAUUGGCU-------GGGUcc -5'
23055 3' -53.5 NC_005178.1 + 5260 0.66 0.715113
Target:  5'- aACCUGG-AGCAGUuGGCCGAggccgccaccgUUCAGGg -3'
miRNA:   3'- gUGGGCCuUCGUUA-UUGGCU-----------GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 32628 0.66 0.715113
Target:  5'- gACCCGGucgccGAGCGGUGccgUCGACCUGGu -3'
miRNA:   3'- gUGGGCC-----UUCGUUAUu--GGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 30956 0.66 0.715113
Target:  5'- aCAgCCGGuuGUAAUAGuuGucuUCCAGGg -3'
miRNA:   3'- -GUgGGCCuuCGUUAUUggCu--GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 20870 0.66 0.726132
Target:  5'- gGCCaguaaGGAGGCGcuAUGACCG-CCCuGa -3'
miRNA:   3'- gUGGg----CCUUCGU--UAUUGGCuGGGuCc -5'
23055 3' -53.5 NC_005178.1 + 20382 0.66 0.726132
Target:  5'- cCGCCCuGAAGCc--GGCCcuggacGCCCAGGc -3'
miRNA:   3'- -GUGGGcCUUCGuuaUUGGc-----UGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.