Results 61 - 69 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 23055 | 3' | -53.5 | NC_005178.1 | + | 10296 | 0.66 | 0.737051 |
|
Target: 5'- aGCUCGGcGGCAcguccuggcggAUAGCCGAgggCCGGGc -3' miRNA: 3'- gUGGGCCuUCGU-----------UAUUGGCUg--GGUCC- -5' |
|||||||
| 23055 | 3' | -53.5 | NC_005178.1 | + | 23337 | 0.66 | 0.726132 |
|
Target: 5'- cUACCUGGgcGaCGA-GAUCGGCaCCGGGg -3' miRNA: 3'- -GUGGGCCuuC-GUUaUUGGCUG-GGUCC- -5' |
|||||||
| 23055 | 3' | -53.5 | NC_005178.1 | + | 20382 | 0.66 | 0.726132 |
|
Target: 5'- cCGCCCuGAAGCc--GGCCcuggacGCCCAGGc -3' miRNA: 3'- -GUGGGcCUUCGuuaUUGGc-----UGGGUCC- -5' |
|||||||
| 23055 | 3' | -53.5 | NC_005178.1 | + | 20870 | 0.66 | 0.726132 |
|
Target: 5'- gGCCaguaaGGAGGCGcuAUGACCG-CCCuGa -3' miRNA: 3'- gUGGg----CCUUCGU--UAUUGGCuGGGuCc -5' |
|||||||
| 23055 | 3' | -53.5 | NC_005178.1 | + | 5260 | 0.66 | 0.715113 |
|
Target: 5'- aACCUGG-AGCAGUuGGCCGAggccgccaccgUUCAGGg -3' miRNA: 3'- gUGGGCCuUCGUUA-UUGGCU-----------GGGUCC- -5' |
|||||||
| 23055 | 3' | -53.5 | NC_005178.1 | + | 32628 | 0.66 | 0.715113 |
|
Target: 5'- gACCCGGucgccGAGCGGUGccgUCGACCUGGu -3' miRNA: 3'- gUGGGCC-----UUCGUUAUu--GGCUGGGUCc -5' |
|||||||
| 23055 | 3' | -53.5 | NC_005178.1 | + | 12413 | 0.66 | 0.714006 |
|
Target: 5'- -cCCCGGuGGCGGUGACUGAugacaacCCCGa- -3' miRNA: 3'- guGGGCCuUCGUUAUUGGCU-------GGGUcc -5' |
|||||||
| 23055 | 3' | -53.5 | NC_005178.1 | + | 25750 | 0.66 | 0.704006 |
|
Target: 5'- gCugCCaGggGuCGAggGAUCGACCCGGa -3' miRNA: 3'- -GugGGcCuuC-GUUa-UUGGCUGGGUCc -5' |
|||||||
| 23055 | 3' | -53.5 | NC_005178.1 | + | 31859 | 0.66 | 0.689457 |
|
Target: 5'- cCACCuUGGAcaacGGCAgcgcgauuccccgcGUGACCGACgucgCCGGGa -3' miRNA: 3'- -GUGG-GCCU----UCGU--------------UAUUGGCUG----GGUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home