Results 21 - 40 of 72 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 32295 | 0.67 | 0.269312 |
Target: 5'- gGUCGGCucgaccaGGCgGCCCAGG-GCG-GCGUCg -3' miRNA: 3'- -UAGCCG-------UCG-CGGGUUUgCGCgCGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 30571 | 0.67 | 0.263215 |
Target: 5'- -cCGGCAccuCGCCCAcauaccgcgAGCGCuGCugaGCGCCg -3' miRNA: 3'- uaGCCGUc--GCGGGU---------UUGCG-CG---CGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 28315 | 0.67 | 0.263215 |
Target: 5'- cAUUGGCGGCGgCCAgcGAgGCGgcaGCgGCCu -3' miRNA: 3'- -UAGCCGUCGCgGGU--UUgCGCg--CG-CGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 21085 | 0.67 | 0.261876 |
Target: 5'- -gCGGaUGGCGCCaaggucgucCGUGUGCGCCg -3' miRNA: 3'- uaGCC-GUCGCGGguuu-----GCGCGCGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 28544 | 0.67 | 0.256573 |
Target: 5'- cUgGGCGGgGgCCGucCGC-CGCGCCa -3' miRNA: 3'- uAgCCGUCgCgGGUuuGCGcGCGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 21156 | 0.67 | 0.249426 |
Target: 5'- --aGGCGGCGCacaCGGACgaccuugGCGCcauccGCGCCa -3' miRNA: 3'- uagCCGUCGCGg--GUUUG-------CGCG-----CGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 2742 | 0.67 | 0.248144 |
Target: 5'- uUCGGCAGgGCCgAAACGUGguacucauauccacCaccGCGCCc -3' miRNA: 3'- uAGCCGUCgCGGgUUUGCGC--------------G---CGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 6391 | 0.67 | 0.243701 |
Target: 5'- --gGGCGucuGCGCUCGAuuguCGCggcgagGCGCGCCg -3' miRNA: 3'- uagCCGU---CGCGGGUUu---GCG------CGCGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 35048 | 0.67 | 0.243701 |
Target: 5'- -cUGGuCGGCGCCUcgGCcaGCGCG-GCCa -3' miRNA: 3'- uaGCC-GUCGCGGGuuUG--CGCGCgCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 1519 | 0.67 | 0.243701 |
Target: 5'- cUgGGCGGCGUaguugcacucaCCAGGuauaGCGCGgGCCg -3' miRNA: 3'- uAgCCGUCGCG-----------GGUUUg---CGCGCgCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 31957 | 0.67 | 0.243072 |
Target: 5'- -cCGGCAGCGCCaucccggcgacguCGGucACGCGgggaauCGCGCUg -3' miRNA: 3'- uaGCCGUCGCGG-------------GUU--UGCGC------GCGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 17327 | 0.68 | 0.237469 |
Target: 5'- -aCGGCGGggccgagguCGCCCAGcucgGCaGCcCGCGCCg -3' miRNA: 3'- uaGCCGUC---------GCGGGUU----UG-CGcGCGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 3978 | 0.68 | 0.237469 |
Target: 5'- uUCGuGCAGCGCCCAGGCuucguUGgGgGUCa -3' miRNA: 3'- uAGC-CGUCGCGGGUUUGc----GCgCgCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 18621 | 0.68 | 0.235625 |
Target: 5'- gGUCGGCgcggguugugaucgAGCGCgCCAgggcguugguGACcuggagaaucggGUGCGCGCCg -3' miRNA: 3'- -UAGCCG--------------UCGCG-GGU----------UUG------------CGCGCGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 12057 | 0.68 | 0.231371 |
Target: 5'- cUCGGCAGCaGCCCGGuaccaGCcCGCaCCa -3' miRNA: 3'- uAGCCGUCG-CGGGUUug---CGcGCGcGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 3942 | 0.68 | 0.231371 |
Target: 5'- -gCGGCGGCGgCCGguguucgggucAACGaUGCGCGgCa -3' miRNA: 3'- uaGCCGUCGCgGGU-----------UUGC-GCGCGCgG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 10298 | 0.68 | 0.227775 |
Target: 5'- cUCGGCGGCacguccuggcggauaGCCgagggcCGGGCGCggaggggcgaaGCGCGCCg -3' miRNA: 3'- uAGCCGUCG---------------CGG------GUUUGCG-----------CGCGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 10124 | 0.68 | 0.225405 |
Target: 5'- gGUCGGCGuaGCuCCAGGgGCGauggGCGCUg -3' miRNA: 3'- -UAGCCGUcgCG-GGUUUgCGCg---CGCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 8123 | 0.68 | 0.21957 |
Target: 5'- uUCGGUgaccaGGUGCCCGAGgGCGCcaucgagauCGCCc -3' miRNA: 3'- uAGCCG-----UCGCGGGUUUgCGCGc--------GCGG- -5' |
|||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 1282 | 0.68 | 0.213865 |
Target: 5'- -gCGGCAGCGUCCGAAuCGCucagagaCGCuGCUg -3' miRNA: 3'- uaGCCGUCGCGGGUUU-GCGc------GCG-CGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home