miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23056 3' -61.1 NC_005178.1 + 32295 0.67 0.269312
Target:  5'- gGUCGGCucgaccaGGCgGCCCAGG-GCG-GCGUCg -3'
miRNA:   3'- -UAGCCG-------UCG-CGGGUUUgCGCgCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 30571 0.67 0.263215
Target:  5'- -cCGGCAccuCGCCCAcauaccgcgAGCGCuGCugaGCGCCg -3'
miRNA:   3'- uaGCCGUc--GCGGGU---------UUGCG-CG---CGCGG- -5'
23056 3' -61.1 NC_005178.1 + 28315 0.67 0.263215
Target:  5'- cAUUGGCGGCGgCCAgcGAgGCGgcaGCgGCCu -3'
miRNA:   3'- -UAGCCGUCGCgGGU--UUgCGCg--CG-CGG- -5'
23056 3' -61.1 NC_005178.1 + 21085 0.67 0.261876
Target:  5'- -gCGGaUGGCGCCaaggucgucCGUGUGCGCCg -3'
miRNA:   3'- uaGCC-GUCGCGGguuu-----GCGCGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 28544 0.67 0.256573
Target:  5'- cUgGGCGGgGgCCGucCGC-CGCGCCa -3'
miRNA:   3'- uAgCCGUCgCgGGUuuGCGcGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 21156 0.67 0.249426
Target:  5'- --aGGCGGCGCacaCGGACgaccuugGCGCcauccGCGCCa -3'
miRNA:   3'- uagCCGUCGCGg--GUUUG-------CGCG-----CGCGG- -5'
23056 3' -61.1 NC_005178.1 + 2742 0.67 0.248144
Target:  5'- uUCGGCAGgGCCgAAACGUGguacucauauccacCaccGCGCCc -3'
miRNA:   3'- uAGCCGUCgCGGgUUUGCGC--------------G---CGCGG- -5'
23056 3' -61.1 NC_005178.1 + 35048 0.67 0.243701
Target:  5'- -cUGGuCGGCGCCUcgGCcaGCGCG-GCCa -3'
miRNA:   3'- uaGCC-GUCGCGGGuuUG--CGCGCgCGG- -5'
23056 3' -61.1 NC_005178.1 + 1519 0.67 0.243701
Target:  5'- cUgGGCGGCGUaguugcacucaCCAGGuauaGCGCGgGCCg -3'
miRNA:   3'- uAgCCGUCGCG-----------GGUUUg---CGCGCgCGG- -5'
23056 3' -61.1 NC_005178.1 + 6391 0.67 0.243701
Target:  5'- --gGGCGucuGCGCUCGAuuguCGCggcgagGCGCGCCg -3'
miRNA:   3'- uagCCGU---CGCGGGUUu---GCG------CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 31957 0.67 0.243072
Target:  5'- -cCGGCAGCGCCaucccggcgacguCGGucACGCGgggaauCGCGCUg -3'
miRNA:   3'- uaGCCGUCGCGG-------------GUU--UGCGC------GCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 3978 0.68 0.237469
Target:  5'- uUCGuGCAGCGCCCAGGCuucguUGgGgGUCa -3'
miRNA:   3'- uAGC-CGUCGCGGGUUUGc----GCgCgCGG- -5'
23056 3' -61.1 NC_005178.1 + 17327 0.68 0.237469
Target:  5'- -aCGGCGGggccgagguCGCCCAGcucgGCaGCcCGCGCCg -3'
miRNA:   3'- uaGCCGUC---------GCGGGUU----UG-CGcGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 18621 0.68 0.235625
Target:  5'- gGUCGGCgcggguugugaucgAGCGCgCCAgggcguugguGACcuggagaaucggGUGCGCGCCg -3'
miRNA:   3'- -UAGCCG--------------UCGCG-GGU----------UUG------------CGCGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 3942 0.68 0.231371
Target:  5'- -gCGGCGGCGgCCGguguucgggucAACGaUGCGCGgCa -3'
miRNA:   3'- uaGCCGUCGCgGGU-----------UUGC-GCGCGCgG- -5'
23056 3' -61.1 NC_005178.1 + 12057 0.68 0.231371
Target:  5'- cUCGGCAGCaGCCCGGuaccaGCcCGCaCCa -3'
miRNA:   3'- uAGCCGUCG-CGGGUUug---CGcGCGcGG- -5'
23056 3' -61.1 NC_005178.1 + 10298 0.68 0.227775
Target:  5'- cUCGGCGGCacguccuggcggauaGCCgagggcCGGGCGCggaggggcgaaGCGCGCCg -3'
miRNA:   3'- uAGCCGUCG---------------CGG------GUUUGCG-----------CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 10124 0.68 0.225405
Target:  5'- gGUCGGCGuaGCuCCAGGgGCGauggGCGCUg -3'
miRNA:   3'- -UAGCCGUcgCG-GGUUUgCGCg---CGCGG- -5'
23056 3' -61.1 NC_005178.1 + 8123 0.68 0.21957
Target:  5'- uUCGGUgaccaGGUGCCCGAGgGCGCcaucgagauCGCCc -3'
miRNA:   3'- uAGCCG-----UCGCGGGUUUgCGCGc--------GCGG- -5'
23056 3' -61.1 NC_005178.1 + 9645 0.68 0.213865
Target:  5'- -gCGGCGacCGCCC-AGCGCaGCGCGgCg -3'
miRNA:   3'- uaGCCGUc-GCGGGuUUGCG-CGCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.