miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23056 5' -55 NC_005178.1 + 7846 0.65 0.622583
Target:  5'- cCGGCGag--GUCCAGUGGCgcauCCGUc -3'
miRNA:   3'- uGUCGCaguaCAGGUCAUCGac--GGCG- -5'
23056 5' -55 NC_005178.1 + 15114 0.66 0.577037
Target:  5'- -aGGCGggcUGUCCAGUAcCUGCCcgaGCg -3'
miRNA:   3'- ugUCGCaguACAGGUCAUcGACGG---CG- -5'
23056 5' -55 NC_005178.1 + 13326 0.67 0.532266
Target:  5'- cCGGUgGUUGUGUCCAcagGGC-GCCGCa -3'
miRNA:   3'- uGUCG-CAGUACAGGUca-UCGaCGGCG- -5'
23056 5' -55 NC_005178.1 + 31729 0.67 0.532266
Target:  5'- uCAGCGUaggcUGUUCGGUcAGCUG-CGCg -3'
miRNA:   3'- uGUCGCAgu--ACAGGUCA-UCGACgGCG- -5'
23056 5' -55 NC_005178.1 + 18167 0.67 0.532266
Target:  5'- cACAGCacCAUGgcgggcugggCCAGgcGCUGCgGCa -3'
miRNA:   3'- -UGUCGcaGUACa---------GGUCauCGACGgCG- -5'
23056 5' -55 NC_005178.1 + 29176 0.68 0.478199
Target:  5'- uUAGCaaaCGcgGUCCAGUAGUcGCCGCc -3'
miRNA:   3'- uGUCGca-GUa-CAGGUCAUCGaCGGCG- -5'
23056 5' -55 NC_005178.1 + 4596 0.68 0.453217
Target:  5'- gGCGGCGUCcgGcucgaugggcaggCCGG-AGCguUGCCGCu -3'
miRNA:   3'- -UGUCGCAGuaCa------------GGUCaUCG--ACGGCG- -5'
23056 5' -55 NC_005178.1 + 21092 0.69 0.436963
Target:  5'- cGCGGCccagguagGUCAgg-CCGGUGgcgguGCUGCCGCc -3'
miRNA:   3'- -UGUCG--------CAGUacaGGUCAU-----CGACGGCG- -5'
23056 5' -55 NC_005178.1 + 7202 0.69 0.407416
Target:  5'- aGCAGCG-CAucgcgacgggguUGUUCAGcGGCgccgGCCGCu -3'
miRNA:   3'- -UGUCGCaGU------------ACAGGUCaUCGa---CGGCG- -5'
23056 5' -55 NC_005178.1 + 29141 0.69 0.397848
Target:  5'- uACAGCccgCggGUUCAGgcGCUGCUGUg -3'
miRNA:   3'- -UGUCGca-GuaCAGGUCauCGACGGCG- -5'
23056 5' -55 NC_005178.1 + 28227 0.7 0.361053
Target:  5'- aGCGGCGcCGccgcuaUCCAGgccGCUGCCGCc -3'
miRNA:   3'- -UGUCGCaGUac----AGGUCau-CGACGGCG- -5'
23056 5' -55 NC_005178.1 + 1351 0.7 0.343566
Target:  5'- aGCAGCGUCucUGagcgaUUCGGacGCUGCCGCu -3'
miRNA:   3'- -UGUCGCAGu-AC-----AGGUCauCGACGGCG- -5'
23056 5' -55 NC_005178.1 + 33244 0.7 0.342707
Target:  5'- gGCGGCGUCGuucauccUGUCCaaGGUcuuGGCgccgaaGCCGCa -3'
miRNA:   3'- -UGUCGCAGU-------ACAGG--UCA---UCGa-----CGGCG- -5'
23056 5' -55 NC_005178.1 + 19904 0.71 0.335053
Target:  5'- aGCAgGCGUaacuUGaaUCCAGgcGCUGCCGUc -3'
miRNA:   3'- -UGU-CGCAgu--AC--AGGUCauCGACGGCG- -5'
23056 5' -55 NC_005178.1 + 27797 0.71 0.302558
Target:  5'- -uGGC-UCGccagGUCCAGgcGCUGCUGCg -3'
miRNA:   3'- ugUCGcAGUa---CAGGUCauCGACGGCG- -5'
23056 5' -55 NC_005178.1 + 35485 0.72 0.279817
Target:  5'- uCAGCGUCAggcUGU-CGGUGGCgGCCaGCg -3'
miRNA:   3'- uGUCGCAGU---ACAgGUCAUCGaCGG-CG- -5'
23056 5' -55 NC_005178.1 + 7036 0.75 0.171037
Target:  5'- -gAGCGUCGUGUCCuGgccgcGCUgaGCCGCa -3'
miRNA:   3'- ugUCGCAGUACAGGuCau---CGA--CGGCG- -5'
23056 5' -55 NC_005178.1 + 31437 1.11 0.000398
Target:  5'- aACAGCGUCAUGUCCAGUAGCUGCCGCu -3'
miRNA:   3'- -UGUCGCAGUACAGGUCAUCGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.