miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23058 5' -54.9 NC_005178.1 + 31912 1.14 0.000274
Target:  5'- uGCCGUUGUCCAAGGUGGACAGCAGGCg -3'
miRNA:   3'- -CGGCAACAGGUUCCACCUGUCGUCCG- -5'
23058 5' -54.9 NC_005178.1 + 4384 0.78 0.11238
Target:  5'- uGCCGagG-CCGGGGaUGGACAGCGGcGCa -3'
miRNA:   3'- -CGGCaaCaGGUUCC-ACCUGUCGUC-CG- -5'
23058 5' -54.9 NC_005178.1 + 3581 0.75 0.182404
Target:  5'- aGCCGUUGUCCAcguagaagauGGccgGGACGccgcccuugauGCAGGCg -3'
miRNA:   3'- -CGGCAACAGGUu---------CCa--CCUGU-----------CGUCCG- -5'
23058 5' -54.9 NC_005178.1 + 11145 0.73 0.246279
Target:  5'- uGCCGg---CCGAGGUGGAU-GCGGGa -3'
miRNA:   3'- -CGGCaacaGGUUCCACCUGuCGUCCg -5'
23058 5' -54.9 NC_005178.1 + 25369 0.72 0.280988
Target:  5'- gGCCGggagcUGUCCGguuuGGG-GGAgacagccgacCAGCAGGCg -3'
miRNA:   3'- -CGGCa----ACAGGU----UCCaCCU----------GUCGUCCG- -5'
23058 5' -54.9 NC_005178.1 + 11292 0.72 0.288379
Target:  5'- aGCUGUUcgaGUCCGcccAGGUGGugGcCGGGCu -3'
miRNA:   3'- -CGGCAA---CAGGU---UCCACCugUcGUCCG- -5'
23058 5' -54.9 NC_005178.1 + 26705 0.71 0.353006
Target:  5'- aCCGUUG-CCGGGGUGGcCAa-GGGCg -3'
miRNA:   3'- cGGCAACaGGUUCCACCuGUcgUCCG- -5'
23058 5' -54.9 NC_005178.1 + 28234 0.69 0.447184
Target:  5'- cGCCGg---CCGAGGcGGAuaCAGCcgAGGCg -3'
miRNA:   3'- -CGGCaacaGGUUCCaCCU--GUCG--UCCG- -5'
23058 5' -54.9 NC_005178.1 + 30954 0.69 0.467645
Target:  5'- aGCCgGUUGuaauaguugucuUCCAGggcgcucuGGUGGACGGCuGGGUa -3'
miRNA:   3'- -CGG-CAAC------------AGGUU--------CCACCUGUCG-UCCG- -5'
23058 5' -54.9 NC_005178.1 + 10189 0.68 0.488577
Target:  5'- gGCCag-GUCUGAGGUGGAucuuCGGgAGGUc -3'
miRNA:   3'- -CGGcaaCAGGUUCCACCU----GUCgUCCG- -5'
23058 5' -54.9 NC_005178.1 + 34379 0.68 0.509939
Target:  5'- uGCCGcUGUUCGAcGaGGACAGC-GGCc -3'
miRNA:   3'- -CGGCaACAGGUUcCaCCUGUCGuCCG- -5'
23058 5' -54.9 NC_005178.1 + 14588 0.68 0.488577
Target:  5'- cGCCGcu-UCCAcaGUGGGuuuuuCAGCAGGCg -3'
miRNA:   3'- -CGGCaacAGGUucCACCU-----GUCGUCCG- -5'
23058 5' -54.9 NC_005178.1 + 32865 0.67 0.542679
Target:  5'- uGCCGUg--C--AGGUGcGGCAGUAGGUg -3'
miRNA:   3'- -CGGCAacaGguUCCAC-CUGUCGUCCG- -5'
23058 5' -54.9 NC_005178.1 + 14069 0.67 0.542679
Target:  5'- uGCUGgccGUCC-GGGUGGuccacCAGCucGGGCa -3'
miRNA:   3'- -CGGCaa-CAGGuUCCACCu----GUCG--UCCG- -5'
23058 5' -54.9 NC_005178.1 + 17936 0.67 0.536071
Target:  5'- aCCGg-GUCCAGGagcacGUccuggaccucgccgaGGGCGGCAGGCg -3'
miRNA:   3'- cGGCaaCAGGUUC-----CA---------------CCUGUCGUCCG- -5'
23058 5' -54.9 NC_005178.1 + 9035 0.67 0.574961
Target:  5'- cGCCGUagcucUGUCCGGGGUgauugaagggguuGGACuGCu-GCa -3'
miRNA:   3'- -CGGCA-----ACAGGUUCCA-------------CCUGuCGucCG- -5'
23058 5' -54.9 NC_005178.1 + 22260 0.67 0.55375
Target:  5'- aGCCGaccgCCAGGcUGGcccgccagGCGGCGGGCg -3'
miRNA:   3'- -CGGCaacaGGUUCcACC--------UGUCGUCCG- -5'
23058 5' -54.9 NC_005178.1 + 6527 0.67 0.576082
Target:  5'- uGCgGUUGgCCAAGGgaaugccucUGGA--GCAGGCc -3'
miRNA:   3'- -CGgCAACaGGUUCC---------ACCUguCGUCCG- -5'
23058 5' -54.9 NC_005178.1 + 23439 0.67 0.564887
Target:  5'- cGCCGacGcCCAGGGc-GACGGCcaGGGCg -3'
miRNA:   3'- -CGGCaaCaGGUUCCacCUGUCG--UCCG- -5'
23058 5' -54.9 NC_005178.1 + 36630 0.66 0.625797
Target:  5'- uGCUGUca-CCAGGGcGGAUagaacuccaccccguAGCGGGCa -3'
miRNA:   3'- -CGGCAacaGGUUCCaCCUG---------------UCGUCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.