miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23061 3' -54.5 NC_005178.1 + 12474 0.69 0.441508
Target:  5'- -cGACcaAUACGGCCucuGCGCCGGaCUGCa -3'
miRNA:   3'- acUUGacUAUGUCGG---CGUGGCC-GACG- -5'
23061 3' -54.5 NC_005178.1 + 11988 0.68 0.493739
Target:  5'- ---cCUGGUGCgGGCUgGUACCGgGCUGCu -3'
miRNA:   3'- acuuGACUAUG-UCGG-CGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 7278 0.68 0.503444
Target:  5'- aGAGCc--UGCGcaccuucaacgacGCCGC-CCGGCUGCu -3'
miRNA:   3'- aCUUGacuAUGU-------------CGGCGuGGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 30270 0.68 0.504528
Target:  5'- -----cGGUACAGCgGCGgCGGCaGCg -3'
miRNA:   3'- acuugaCUAUGUCGgCGUgGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 5732 0.68 0.515417
Target:  5'- gGAGCaGAU-C-GCCGCAUCGGUgGCg -3'
miRNA:   3'- aCUUGaCUAuGuCGGCGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 16865 0.77 0.137485
Target:  5'- gGAugUGAU-CAGCCGCggagguagcgagGCCGaGCUGCu -3'
miRNA:   3'- aCUugACUAuGUCGGCG------------UGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 20011 0.67 0.537469
Target:  5'- aGAGCaGAacggcCAGcCCGCGCCcGCUGCc -3'
miRNA:   3'- aCUUGaCUau---GUC-GGCGUGGcCGACG- -5'
23061 3' -54.5 NC_005178.1 + 18399 0.67 0.537469
Target:  5'- --cGCUGAUGC-GCgGCAUC-GCUGCu -3'
miRNA:   3'- acuUGACUAUGuCGgCGUGGcCGACG- -5'
23061 3' -54.5 NC_005178.1 + 1695 0.67 0.548618
Target:  5'- cGAugUGcgugGCGGCCGCGuggcuuaCGGCcGCg -3'
miRNA:   3'- aCUugACua--UGUCGGCGUg------GCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 4939 0.67 0.582459
Target:  5'- gGAACUGGccgccaGCGGCCGC-CC-GCUGa -3'
miRNA:   3'- aCUUGACUa-----UGUCGGCGuGGcCGACg -5'
23061 3' -54.5 NC_005178.1 + 30772 0.66 0.593841
Target:  5'- gGAGCUGAaccaggACAuCCGC-CUGGCaGCg -3'
miRNA:   3'- aCUUGACUa-----UGUcGGCGuGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 18331 0.66 0.605258
Target:  5'- gGAGCUGGUGgaccgcgaggucCAGgaGCGCCuGGCgGCa -3'
miRNA:   3'- aCUUGACUAU------------GUCggCGUGG-CCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 14003 0.66 0.605258
Target:  5'- cGAGCUGGUggaccacccggACGGCCaGCACgaagccauugCGGCgccGCg -3'
miRNA:   3'- aCUUGACUA-----------UGUCGG-CGUG----------GCCGa--CG- -5'
23061 3' -54.5 NC_005178.1 + 11769 0.66 0.6167
Target:  5'- cGAGCcaugggGGUuCcGCCGCagGCCGGcCUGCa -3'
miRNA:   3'- aCUUGa-----CUAuGuCGGCG--UGGCC-GACG- -5'
23061 3' -54.5 NC_005178.1 + 32192 0.66 0.6167
Target:  5'- cGAGCUGG-AC-GCCGaCACCGaGCguuugGCc -3'
miRNA:   3'- aCUUGACUaUGuCGGC-GUGGC-CGa----CG- -5'
23061 3' -54.5 NC_005178.1 + 10331 0.66 0.6167
Target:  5'- cGGGCgcgGAgggGCgaAG-CGCGCCGgGCUGCg -3'
miRNA:   3'- aCUUGa--CUa--UG--UCgGCGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 25168 0.66 0.628156
Target:  5'- cGAGCUGAUggcggucaaccAUGGCUuCGCCGGggGCu -3'
miRNA:   3'- aCUUGACUA-----------UGUCGGcGUGGCCgaCG- -5'
23061 3' -54.5 NC_005178.1 + 15091 0.66 0.638471
Target:  5'- cGAGCUGGUGaagcgcuCGGCCaagGCgGGCUGUc -3'
miRNA:   3'- aCUUGACUAU-------GUCGGcg-UGgCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 35535 0.66 0.639617
Target:  5'- gUGAACUGGgcgaagcGCGaCCGCAUUGGCcagGCc -3'
miRNA:   3'- -ACUUGACUa------UGUcGGCGUGGCCGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.