miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23061 5' -48.8 NC_005178.1 + 1780 0.68 0.823304
Target:  5'- cGGCGAGCagugcaUCGCGGCcGU--AAGCc -3'
miRNA:   3'- uUCGCUCGaa----AGCGCCGaCAauUUUG- -5'
23061 5' -48.8 NC_005178.1 + 4244 0.7 0.688729
Target:  5'- gAAGCuGGCauguagUCGCGGCUGUUGc--- -3'
miRNA:   3'- -UUCGcUCGaa----AGCGCCGACAAUuuug -5'
23061 5' -48.8 NC_005178.1 + 8651 0.72 0.592037
Target:  5'- cGGCGAGCg--CGUGGUgcaGUUGGGGCc -3'
miRNA:   3'- uUCGCUCGaaaGCGCCGa--CAAUUUUG- -5'
23061 5' -48.8 NC_005178.1 + 16046 0.67 0.842989
Target:  5'- uAGCGGGCUguucCGCGuGCUGgccuGGCc -3'
miRNA:   3'- uUCGCUCGAaa--GCGC-CGACaauuUUG- -5'
23061 5' -48.8 NC_005178.1 + 21984 0.66 0.90289
Target:  5'- -cGCGAGC-UUCG-GGUUGgu-GAGCa -3'
miRNA:   3'- uuCGCUCGaAAGCgCCGACaauUUUG- -5'
23061 5' -48.8 NC_005178.1 + 32450 1.08 0.00262
Target:  5'- cAAGCGAGCUUUCGCGGCUGUUAAAACu -3'
miRNA:   3'- -UUCGCUCGAAAGCGCCGACAAUUUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.