Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23062 | 3' | -58.6 | NC_005178.1 | + | 3038 | 0.67 | 0.385424 |
Target: 5'- uCGGCAgGCcAUCCGCGcUCGGgCGGcCg -3' miRNA: 3'- -GCCGU-CGaUAGGUGCcAGCCgGUCaG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 3095 | 0.67 | 0.37646 |
Target: 5'- uCGGCaccagGGCg--CCACGcUCGGCCuGGUCc -3' miRNA: 3'- -GCCG-----UCGauaGGUGCcAGCCGG-UCAG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 3939 | 0.66 | 0.439125 |
Target: 5'- gCGGCGGCcggUGUUCgggucaacgaugcGCGGcaagcugcugugCGGCCGGUCg -3' miRNA: 3'- -GCCGUCG---AUAGG-------------UGCCa-----------GCCGGUCAG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 4996 | 0.66 | 0.439125 |
Target: 5'- gCGGCcGCUGgcggCCAguuccucggcgaucUGGUCGGCCAu-- -3' miRNA: 3'- -GCCGuCGAUa---GGU--------------GCCAGCCGGUcag -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 5370 | 0.68 | 0.309938 |
Target: 5'- aGGC-GCUGga---GGUCGGCCAGUUc -3' miRNA: 3'- gCCGuCGAUaggugCCAGCCGGUCAG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 5555 | 0.68 | 0.333789 |
Target: 5'- gGGCGGCUAcgucgaggcgaUCCGCGGauucaagcgCGGCgaagaGGUCg -3' miRNA: 3'- gCCGUCGAU-----------AGGUGCCa--------GCCGg----UCAG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 7753 | 0.66 | 0.413148 |
Target: 5'- uGGCGGUccUCCAgGG-CGGaguCCAGUCc -3' miRNA: 3'- gCCGUCGauAGGUgCCaGCC---GGUCAG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 7849 | 0.66 | 0.4323 |
Target: 5'- uCGGuCAGCUcggCACGGUUGGCCucgCa -3' miRNA: 3'- -GCC-GUCGAuagGUGCCAGCCGGucaG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 9505 | 0.66 | 0.442069 |
Target: 5'- cCGGCAGaCcGUCC-CGGcuaGGCCGGg- -3' miRNA: 3'- -GCCGUC-GaUAGGuGCCag-CCGGUCag -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 12355 | 0.74 | 0.114296 |
Target: 5'- aGGCAGCgcgAUCaccaGCGGuuUCGGCCAGg- -3' miRNA: 3'- gCCGUCGa--UAGg---UGCC--AGCCGGUCag -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 12858 | 0.66 | 0.422659 |
Target: 5'- uGGCGGCcgcgaccUCCAgGGaCuGCCGGUCg -3' miRNA: 3'- gCCGUCGau-----AGGUgCCaGcCGGUCAG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 16635 | 0.68 | 0.316169 |
Target: 5'- gGGCGGUaaugacguugCCAUGG-CGGCCAgGUCg -3' miRNA: 3'- gCCGUCGaua-------GGUGCCaGCCGGU-CAG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 18619 | 0.73 | 0.151392 |
Target: 5'- -cGCAGCUAUCCAgCaGUUGGgCGGUCa -3' miRNA: 3'- gcCGUCGAUAGGU-GcCAGCCgGUCAG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 21634 | 0.67 | 0.358958 |
Target: 5'- uCGGCGGCUcagcUCC-CGGaCGaGCUGGUCu -3' miRNA: 3'- -GCCGUCGAu---AGGuGCCaGC-CGGUCAG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 26620 | 0.68 | 0.317741 |
Target: 5'- gGGCGGCUAUCUGCucguaaaccgaGG-CGGUCAGg- -3' miRNA: 3'- gCCGUCGAUAGGUG-----------CCaGCCGGUCag -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 28431 | 0.72 | 0.169089 |
Target: 5'- cCGGCcuGGCUAUCCAacaaugaGGUCGuaauCCGGUCg -3' miRNA: 3'- -GCCG--UCGAUAGGUg------CCAGCc---GGUCAG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 29230 | 0.67 | 0.358958 |
Target: 5'- aGuCAGCacgAUCUACGaGUCGGCCGG-Cg -3' miRNA: 3'- gCcGUCGa--UAGGUGC-CAGCCGGUCaG- -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 30161 | 0.67 | 0.342033 |
Target: 5'- uGGCgucGGCUAU--ACGGgCGGCCAGUa -3' miRNA: 3'- gCCG---UCGAUAggUGCCaGCCGGUCAg -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 30643 | 0.68 | 0.309938 |
Target: 5'- uCGGCAGCaccagcgCCugGGUCGGUUAu-- -3' miRNA: 3'- -GCCGUCGaua----GGugCCAGCCGGUcag -5' |
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23062 | 3' | -58.6 | NC_005178.1 | + | 31957 | 0.68 | 0.317741 |
Target: 5'- cCGGCAGCgccAUCC-CGG-CGacGUCGGUCa -3' miRNA: 3'- -GCCGUCGa--UAGGuGCCaGC--CGGUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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