Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23062 | 3' | -58.6 | NC_005178.1 | + | 30643 | 0.68 | 0.309938 |
|
Target: 5'- uCGGCAGCaccagcgCCugGGUCGGUUAu-- -3' miRNA: 3'- -GCCGUCGaua----GGugCCAGCCGGUcag -5' |
|||||||
| 23062 | 3' | -58.6 | NC_005178.1 | + | 5370 | 0.68 | 0.309938 |
|
Target: 5'- aGGC-GCUGga---GGUCGGCCAGUUc -3' miRNA: 3'- gCCGuCGAUaggugCCAGCCGGUCAG- -5' |
|||||||
| 23062 | 3' | -58.6 | NC_005178.1 | + | 35098 | 0.68 | 0.294771 |
|
Target: 5'- aCGcGCcagAGCUGccgaCGCGGUCGGUCAGUg -3' miRNA: 3'- -GC-CG---UCGAUag--GUGCCAGCCGGUCAg -5' |
|||||||
| 23062 | 3' | -58.6 | NC_005178.1 | + | 33912 | 0.68 | 0.294771 |
|
Target: 5'- uGGCGGCgAUgCuCGG-CGGCCGGUg -3' miRNA: 3'- gCCGUCGaUAgGuGCCaGCCGGUCAg -5' |
|||||||
| 23062 | 3' | -58.6 | NC_005178.1 | + | 35158 | 0.72 | 0.173794 |
|
Target: 5'- gCGGCAGCUcggcggcgaguaGUCC--GGUCGGgcaCCAGUCg -3' miRNA: 3'- -GCCGUCGA------------UAGGugCCAGCC---GGUCAG- -5' |
|||||||
| 23062 | 3' | -58.6 | NC_005178.1 | + | 28431 | 0.72 | 0.169089 |
|
Target: 5'- cCGGCcuGGCUAUCCAacaaugaGGUCGuaauCCGGUCg -3' miRNA: 3'- -GCCG--UCGAUAGGUg------CCAGCc---GGUCAG- -5' |
|||||||
| 23062 | 3' | -58.6 | NC_005178.1 | + | 18619 | 0.73 | 0.151392 |
|
Target: 5'- -cGCAGCUAUCCAgCaGUUGGgCGGUCa -3' miRNA: 3'- gcCGUCGAUAGGU-GcCAGCCgGUCAG- -5' |
|||||||
| 23062 | 3' | -58.6 | NC_005178.1 | + | 32690 | 0.73 | 0.135393 |
|
Target: 5'- aGGCAGCgguuUCUugGGUaGGCCAGa- -3' miRNA: 3'- gCCGUCGau--AGGugCCAgCCGGUCag -5' |
|||||||
| 23062 | 3' | -58.6 | NC_005178.1 | + | 12355 | 0.74 | 0.114296 |
|
Target: 5'- aGGCAGCgcgAUCaccaGCGGuuUCGGCCAGg- -3' miRNA: 3'- gCCGUCGa--UAGg---UGCC--AGCCGGUCag -5' |
|||||||
| 23062 | 3' | -58.6 | NC_005178.1 | + | 32790 | 1.08 | 0.000307 |
|
Target: 5'- gCGGCAGCUAUCCACGGUCGGCCAGUCc -3' miRNA: 3'- -GCCGUCGAUAGGUGCCAGCCGGUCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home