miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23064 3' -52.5 NC_005178.1 + 26175 0.68 0.637666
Target:  5'- aUCaUCGGCgCGGCGgUGGCCGcugcGGGCGu -3'
miRNA:   3'- -AGaAGCUG-GUCGUgACUGGCu---UCUGC- -5'
23064 3' -52.5 NC_005178.1 + 28290 0.68 0.637666
Target:  5'- ---gUGACCGGCGCUGcgggagcuGCCGggGcCGc -3'
miRNA:   3'- agaaGCUGGUCGUGAC--------UGGCuuCuGC- -5'
23064 3' -52.5 NC_005178.1 + 10963 0.68 0.637666
Target:  5'- ---gCGGCCccAGCgaaucccuuGCUGAUCGAGGGCGg -3'
miRNA:   3'- agaaGCUGG--UCG---------UGACUGGCUUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 27507 0.68 0.626197
Target:  5'- ---gCGAUgGGCGCUGGCCaGGAGcGCGg -3'
miRNA:   3'- agaaGCUGgUCGUGACUGG-CUUC-UGC- -5'
23064 3' -52.5 NC_005178.1 + 30648 0.69 0.614734
Target:  5'- cUCagCGGCgAGCAgCUGGaCGAAGACGg -3'
miRNA:   3'- -AGaaGCUGgUCGU-GACUgGCUUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 36076 0.69 0.603287
Target:  5'- ---cUGACCAGUucGCUGACCu-GGGCGg -3'
miRNA:   3'- agaaGCUGGUCG--UGACUGGcuUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 10707 0.69 0.580484
Target:  5'- cUCgUUGaACCAGCccaACgGGCCGAAGACa -3'
miRNA:   3'- -AGaAGC-UGGUCG---UGaCUGGCUUCUGc -5'
23064 3' -52.5 NC_005178.1 + 321 0.69 0.573676
Target:  5'- gCUUCGACCcaggcugucagguccGGCGCUGuGCCGGuaGCGa -3'
miRNA:   3'- aGAAGCUGG---------------UCGUGAC-UGGCUucUGC- -5'
23064 3' -52.5 NC_005178.1 + 20945 0.7 0.556742
Target:  5'- --gUUGACCGGCACcugacgcccagcuUGACCaGGGGCGg -3'
miRNA:   3'- agaAGCUGGUCGUG-------------ACUGGcUUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 2575 0.7 0.524444
Target:  5'- --cUCGGCCAGCGC-GGCCaaguAGGACGc -3'
miRNA:   3'- agaAGCUGGUCGUGaCUGGc---UUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 23491 0.71 0.46431
Target:  5'- --cUCGGCCggcugcucaaGGCACUGACCGGcuggguuccugaucaGGGCGu -3'
miRNA:   3'- agaAGCUGG----------UCGUGACUGGCU---------------UCUGC- -5'
23064 3' -52.5 NC_005178.1 + 33359 0.72 0.419686
Target:  5'- gUCUUCGGUCAGUGCUGGUCGAAGAg- -3'
miRNA:   3'- -AGAAGCUGGUCGUGACUGGCUUCUgc -5'
23064 3' -52.5 NC_005178.1 + 34982 0.72 0.409911
Target:  5'- --cUUGGCC-GCGCUGGCCG-AGGCGc -3'
miRNA:   3'- agaAGCUGGuCGUGACUGGCuUCUGC- -5'
23064 3' -52.5 NC_005178.1 + 13040 0.73 0.390792
Target:  5'- ---cUGGCCAGC-CUGGCCGAugccuacaacaAGACGg -3'
miRNA:   3'- agaaGCUGGUCGuGACUGGCU-----------UCUGC- -5'
23064 3' -52.5 NC_005178.1 + 25650 0.73 0.372265
Target:  5'- -gUUCGACCGGCAgCaGGCCGAgcuGGGCa -3'
miRNA:   3'- agAAGCUGGUCGU-GaCUGGCU---UCUGc -5'
23064 3' -52.5 NC_005178.1 + 4191 1.11 0.001001
Target:  5'- cUCUUCGACCAGCACUGACCGAAGACGg -3'
miRNA:   3'- -AGAAGCUGGUCGUGACUGGCUUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.