Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23064 | 5' | -57.7 | NC_005178.1 | + | 3622 | 0.66 | 0.45095 |
|
Target: 5'- -cUGCCCUacaacaGUCA-GGCGCGGGGu-- -3' miRNA: 3'- caGCGGGAg-----CAGUgUCGCGCCCUuua -5' |
|||||||
| 23064 | 5' | -57.7 | NC_005178.1 | + | 1140 | 0.66 | 0.421342 |
|
Target: 5'- cGUCGCCC-CGUucCACGGCGaGaGGAAc- -3' miRNA: 3'- -CAGCGGGaGCA--GUGUCGCgC-CCUUua -5' |
|||||||
| 23064 | 5' | -57.7 | NC_005178.1 | + | 34830 | 0.67 | 0.383748 |
|
Target: 5'- cUCGCCCagggCGgcguucagcagCGCGGCGCGGGu--- -3' miRNA: 3'- cAGCGGGa---GCa----------GUGUCGCGCCCuuua -5' |
|||||||
| 23064 | 5' | -57.7 | NC_005178.1 | + | 28210 | 0.67 | 0.365804 |
|
Target: 5'- -gCGCCgugccaggcaCUCGUCGCAgGCGCaGGAAAc -3' miRNA: 3'- caGCGG----------GAGCAGUGU-CGCGcCCUUUa -5' |
|||||||
| 23064 | 5' | -57.7 | NC_005178.1 | + | 18977 | 0.68 | 0.357052 |
|
Target: 5'- -cUGCgCCUgGUCACggucGGCGCGGGuuGUg -3' miRNA: 3'- caGCG-GGAgCAGUG----UCGCGCCCuuUA- -5' |
|||||||
| 23064 | 5' | -57.7 | NC_005178.1 | + | 36298 | 0.68 | 0.348448 |
|
Target: 5'- gGUUGUCCUCGUCAaucCAGCGUucGGGc--- -3' miRNA: 3'- -CAGCGGGAGCAGU---GUCGCG--CCCuuua -5' |
|||||||
| 23064 | 5' | -57.7 | NC_005178.1 | + | 5883 | 0.68 | 0.339992 |
|
Target: 5'- -cCGCCCaUCGUC-CAGCGCGaGAc-- -3' miRNA: 3'- caGCGGG-AGCAGuGUCGCGCcCUuua -5' |
|||||||
| 23064 | 5' | -57.7 | NC_005178.1 | + | 17442 | 0.69 | 0.277035 |
|
Target: 5'- -cCGUCUUCGaucagcuUCGCGGCGCGGGcgGUg -3' miRNA: 3'- caGCGGGAGC-------AGUGUCGCGCCCuuUA- -5' |
|||||||
| 23064 | 5' | -57.7 | NC_005178.1 | + | 4228 | 1.05 | 0.0006 |
|
Target: 5'- cGUCGCCCUCGUCACAGCGCGGGAAAUc -3' miRNA: 3'- -CAGCGGGAGCAGUGUCGCGCCCUUUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home