Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23065 | 3' | -62.3 | NC_005178.1 | + | 11289 | 0.66 | 0.279053 |
Target: 5'- cCGAGCuguUCGaguCCGcCCAGGUGgUGGCcGGg -3' miRNA: 3'- -GCUCGu--AGC---GGC-GGUCCGC-GCCGuCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 10869 | 0.7 | 0.153688 |
Target: 5'- aGAGCGuuacgacgcUCGCgGCUGGGCuCGGcCAGGa -3' miRNA: 3'- gCUCGU---------AGCGgCGGUCCGcGCC-GUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 10710 | 0.67 | 0.233992 |
Target: 5'- --cGCGUCGCacucacCGCCAGGaugGCGGCAu- -3' miRNA: 3'- gcuCGUAGCG------GCGGUCCg--CGCCGUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 10431 | 0.67 | 0.258945 |
Target: 5'- aCGuGGC-UCGCUGCCacaAGGCGCuGGUAcGGu -3' miRNA: 3'- -GC-UCGuAGCGGCGG---UCCGCG-CCGU-CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 10313 | 0.69 | 0.180376 |
Target: 5'- -uGGCGgauaGCCgaggGCCGGGCGCGGaGGGg -3' miRNA: 3'- gcUCGUag--CGG----CGGUCCGCGCCgUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 9521 | 0.68 | 0.21663 |
Target: 5'- aGAccGCcagCGCCGCCuGGCGCGGgAa- -3' miRNA: 3'- gCU--CGua-GCGGCGGuCCGCGCCgUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 9408 | 0.69 | 0.162161 |
Target: 5'- gCGAGCG-CGCCguGCCAGGCacucGUcGCAGGc -3' miRNA: 3'- -GCUCGUaGCGG--CGGUCCG----CGcCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 8872 | 0.68 | 0.200382 |
Target: 5'- cCGGGCGacuuucUUGCCGaCCuGGUGCGGCucagcGGu -3' miRNA: 3'- -GCUCGU------AGCGGC-GGuCCGCGCCGu----CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 7346 | 0.67 | 0.252509 |
Target: 5'- cCGGGCggCGUCGUUgaAGGUGC-GCAGGc -3' miRNA: 3'- -GCUCGuaGCGGCGG--UCCGCGcCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 7235 | 0.66 | 0.300386 |
Target: 5'- gCGGGUugCGUgGaCAGGCGCGGCAc- -3' miRNA: 3'- -GCUCGuaGCGgCgGUCCGCGCCGUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 6850 | 0.71 | 0.117077 |
Target: 5'- aGGGCAUCaCCGaCCAGGaucaGCaGCAGGc -3' miRNA: 3'- gCUCGUAGcGGC-GGUCCg---CGcCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 5732 | 0.7 | 0.157873 |
Target: 5'- gGAGCAgaUCGCCGCaucGGUGgCGGCcucGGGc -3' miRNA: 3'- gCUCGU--AGCGGCGgu-CCGC-GCCG---UCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 5606 | 0.75 | 0.065116 |
Target: 5'- uCGA-CGUaGCCGcCCAGGCGCaGGCAGGc -3' miRNA: 3'- -GCUcGUAgCGGC-GGUCCGCG-CCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 5265 | 0.67 | 0.228078 |
Target: 5'- gGAGCAguuggccgagGCCGCCAccguucagggccGGCGCGaGCuGGa -3' miRNA: 3'- gCUCGUag--------CGGCGGU------------CCGCGC-CGuCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 4569 | 0.69 | 0.188654 |
Target: 5'- gGAGCGUUGCCGCUcGGCcagcucgcaccacuGCcgguagcgcugGGCGGGa -3' miRNA: 3'- gCUCGUAGCGGCGGuCCG--------------CG-----------CCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 2863 | 0.68 | 0.200382 |
Target: 5'- gCGGGCAUCGgCGaCCAGuuGCuGGCGGu -3' miRNA: 3'- -GCUCGUAGCgGC-GGUCcgCG-CCGUCc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 1611 | 0.69 | 0.162161 |
Target: 5'- aCGu-CAUCGCCGgaCAGGCGCGacauGCGGGc -3' miRNA: 3'- -GCucGUAGCGGCg-GUCCGCGC----CGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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