miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23065 5' -52.3 NC_005178.1 + 27606 0.66 0.756106
Target:  5'- -cCCUgUUCGuuGAGCuggAGGACuUCCAg -3'
miRNA:   3'- caGGAgAAGUggCUUG---UCCUGuAGGU- -5'
23065 5' -52.3 NC_005178.1 + 7529 0.66 0.756106
Target:  5'- -cCCguaaUUCACUGAACAGGAgAacgCCAa -3'
miRNA:   3'- caGGag--AAGUGGCUUGUCCUgUa--GGU- -5'
23065 5' -52.3 NC_005178.1 + 8173 0.67 0.700396
Target:  5'- -aCCUggUCACCGAACuGGAuCAggCCAg -3'
miRNA:   3'- caGGAgaAGUGGCUUGuCCU-GUa-GGU- -5'
23065 5' -52.3 NC_005178.1 + 34132 0.68 0.619651
Target:  5'- cUCgUCUaCACCGGcCGGGACuUCCGg -3'
miRNA:   3'- cAGgAGAaGUGGCUuGUCCUGuAGGU- -5'
23065 5' -52.3 NC_005178.1 + 12485 0.69 0.608071
Target:  5'- -gCCUCUgCGCCGGACugcacuGGGACA-CCGu -3'
miRNA:   3'- caGGAGAaGUGGCUUG------UCCUGUaGGU- -5'
23065 5' -52.3 NC_005178.1 + 15583 0.69 0.57351
Target:  5'- aUCCUgaUCgagGCCGAGCAGGgGCAccUCCAg -3'
miRNA:   3'- cAGGAgaAG---UGGCUUGUCC-UGU--AGGU- -5'
23065 5' -52.3 NC_005178.1 + 33871 0.7 0.506057
Target:  5'- uGUCCUgUUCGgUGAAgaggacCAGGGCGUCCu -3'
miRNA:   3'- -CAGGAgAAGUgGCUU------GUCCUGUAGGu -5'
23065 5' -52.3 NC_005178.1 + 30767 0.71 0.463017
Target:  5'- -gCCUUggaGCUGAAcCAGGACAUCCGc -3'
miRNA:   3'- caGGAGaagUGGCUU-GUCCUGUAGGU- -5'
23065 5' -52.3 NC_005178.1 + 27546 0.72 0.402292
Target:  5'- aGUCCUCcagcUCAaCGAACAGGGCcgCCu -3'
miRNA:   3'- -CAGGAGa---AGUgGCUUGUCCUGuaGGu -5'
23065 5' -52.3 NC_005178.1 + 32178 0.73 0.373884
Target:  5'- aUCCUCaccagCACCGAGCuGGACG-CCGa -3'
miRNA:   3'- cAGGAGaa---GUGGCUUGuCCUGUaGGU- -5'
23065 5' -52.3 NC_005178.1 + 33929 1.09 0.001211
Target:  5'- gGUCCUCUUCACCGAACAGGACAUCCAg -3'
miRNA:   3'- -CAGGAGAAGUGGCUUGUCCUGUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.