miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23066 5' -56.6 NC_005178.1 + 31307 0.66 0.542013
Target:  5'- aGCGCCGGgcuaugCGCCuGGcgCCGCGccgggaguUCGAg -3'
miRNA:   3'- -CGUGGUCa-----GCGG-CCaaGGCGCu-------AGUU- -5'
23066 5' -56.6 NC_005178.1 + 25889 0.66 0.531105
Target:  5'- uGCGgCAGUUGCCGGcgCagaucaccgaCGUGGUCAc -3'
miRNA:   3'- -CGUgGUCAGCGGCCaaG----------GCGCUAGUu -5'
23066 5' -56.6 NC_005178.1 + 30038 0.66 0.520279
Target:  5'- uGCACCgAGUUGCCGGgcugCGCGuUCc- -3'
miRNA:   3'- -CGUGG-UCAGCGGCCaag-GCGCuAGuu -5'
23066 5' -56.6 NC_005178.1 + 28563 0.66 0.520279
Target:  5'- cGCGCCAccgggggcGUCGCCGGcauucCCGCGccAUCc- -3'
miRNA:   3'- -CGUGGU--------CAGCGGCCaa---GGCGC--UAGuu -5'
23066 5' -56.6 NC_005178.1 + 10068 0.66 0.50954
Target:  5'- aGCACgGuUUGCCGGUUuuGCGG-CAc -3'
miRNA:   3'- -CGUGgUcAGCGGCCAAggCGCUaGUu -5'
23066 5' -56.6 NC_005178.1 + 20444 0.66 0.50954
Target:  5'- gGCGuCCAGg-GCCGGcUUCaggGCGGUCAGg -3'
miRNA:   3'- -CGU-GGUCagCGGCC-AAGg--CGCUAGUU- -5'
23066 5' -56.6 NC_005178.1 + 17319 0.66 0.498895
Target:  5'- uGCGCCGGaCGgCGGggCCGaGGUCGc -3'
miRNA:   3'- -CGUGGUCaGCgGCCaaGGCgCUAGUu -5'
23066 5' -56.6 NC_005178.1 + 11815 0.66 0.488351
Target:  5'- aCACCcuGGcCGCCcuGGUgaCCGCGAUCAu -3'
miRNA:   3'- cGUGG--UCaGCGG--CCAa-GGCGCUAGUu -5'
23066 5' -56.6 NC_005178.1 + 12033 0.66 0.488351
Target:  5'- cGCACCAGggcuagGCCGG-UCU-CGAUCAGg -3'
miRNA:   3'- -CGUGGUCag----CGGCCaAGGcGCUAGUU- -5'
23066 5' -56.6 NC_005178.1 + 30648 0.67 0.477912
Target:  5'- aGCACCAG-CGCCugGGUcgguuauugcuUCCggGUGAUCGAg -3'
miRNA:   3'- -CGUGGUCaGCGG--CCA-----------AGG--CGCUAGUU- -5'
23066 5' -56.6 NC_005178.1 + 24527 0.67 0.467584
Target:  5'- aCACC-GUCGCCGGUa-UGCaGAUCAGc -3'
miRNA:   3'- cGUGGuCAGCGGCCAagGCG-CUAGUU- -5'
23066 5' -56.6 NC_005178.1 + 24640 0.67 0.437316
Target:  5'- aGCGCCcaGGUCGCCGGUaUCCGg------ -3'
miRNA:   3'- -CGUGG--UCAGCGGCCA-AGGCgcuaguu -5'
23066 5' -56.6 NC_005178.1 + 8935 0.69 0.336798
Target:  5'- uGUACCGGgcgauggaGCCcaGGUUUCGCGGUCGGu -3'
miRNA:   3'- -CGUGGUCag------CGG--CCAAGGCGCUAGUU- -5'
23066 5' -56.6 NC_005178.1 + 35128 1.07 0.00057
Target:  5'- gGCACCAGUCGCCGGUUCCGCGAUCAAc -3'
miRNA:   3'- -CGUGGUCAGCGGCCAAGGCGCUAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.