miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23067 3' -59.8 NC_005178.1 + 6695 0.66 0.396087
Target:  5'- aGCG-CCUGGAccggGCGGccucacugcugaGCCAggaggugCCGCCAu -3'
miRNA:   3'- gUGCaGGACCU----CGCC------------UGGUa------GGCGGU- -5'
23067 3' -59.8 NC_005178.1 + 24543 0.66 0.387065
Target:  5'- aGC-UCCUGGAGCGGGuCgGUCgCGaCCu -3'
miRNA:   3'- gUGcAGGACCUCGCCU-GgUAG-GC-GGu -5'
23067 3' -59.8 NC_005178.1 + 17981 0.66 0.387065
Target:  5'- gGCGaCgUGGAGCGGuCCAcaaacgcCUGCCAg -3'
miRNA:   3'- gUGCaGgACCUCGCCuGGUa------GGCGGU- -5'
23067 3' -59.8 NC_005178.1 + 15915 0.66 0.387065
Target:  5'- -cCGUcCCUGGAG-GGACCAgUCCaGCUc -3'
miRNA:   3'- guGCA-GGACCUCgCCUGGU-AGG-CGGu -5'
23067 3' -59.8 NC_005178.1 + 35689 0.66 0.38617
Target:  5'- gUugGUCCUauccgcuggccgaGGAcaugGCGGAUgGUCCGCUc -3'
miRNA:   3'- -GugCAGGA-------------CCU----CGCCUGgUAGGCGGu -5'
23067 3' -59.8 NC_005178.1 + 17245 0.66 0.377299
Target:  5'- gAUGUCCUGGAGCacauccaGGcgugacgccuugGCCA-CCGUCAg -3'
miRNA:   3'- gUGCAGGACCUCG-------CC------------UGGUaGGCGGU- -5'
23067 3' -59.8 NC_005178.1 + 16388 0.66 0.360826
Target:  5'- cUACGcCCUGGGGCaGGuCCAUaacgaggugCGCCAu -3'
miRNA:   3'- -GUGCaGGACCUCG-CCuGGUAg--------GCGGU- -5'
23067 3' -59.8 NC_005178.1 + 19902 0.66 0.360826
Target:  5'- gAUGUgCCgGGcuGGCGGAUCGaugCCGCCAg -3'
miRNA:   3'- gUGCA-GGaCC--UCGCCUGGUa--GGCGGU- -5'
23067 3' -59.8 NC_005178.1 + 10305 0.66 0.360826
Target:  5'- gCACGUCCUGGcggauAGCcgaGGGCCGggCGCgGa -3'
miRNA:   3'- -GUGCAGGACC-----UCG---CCUGGUagGCGgU- -5'
23067 3' -59.8 NC_005178.1 + 7480 0.66 0.355729
Target:  5'- cCugG-CCUGGAGCGaACCGaucagcuaccgcgacUUCGCCGg -3'
miRNA:   3'- -GugCaGGACCUCGCcUGGU---------------AGGCGGU- -5'
23067 3' -59.8 NC_005178.1 + 21284 0.67 0.335852
Target:  5'- uGCGgccggCCggGGAGCGGguuucgguGCCGUCCGUg- -3'
miRNA:   3'- gUGCa----GGa-CCUCGCC--------UGGUAGGCGgu -5'
23067 3' -59.8 NC_005178.1 + 3043 0.67 0.312163
Target:  5'- gGCGcCCUGGuGCcGAagGUCCGCCGc -3'
miRNA:   3'- gUGCaGGACCuCGcCUggUAGGCGGU- -5'
23067 3' -59.8 NC_005178.1 + 31668 0.67 0.312163
Target:  5'- cCAgGUggCCUGGAcgggGCGGACCAggUCCagGCCGg -3'
miRNA:   3'- -GUgCA--GGACCU----CGCCUGGU--AGG--CGGU- -5'
23067 3' -59.8 NC_005178.1 + 33612 0.67 0.303801
Target:  5'- -cCGUCCUGGAGaaaaGCCAUCCaauuuagGCCAu -3'
miRNA:   3'- guGCAGGACCUCgcc-UGGUAGG-------CGGU- -5'
23067 3' -59.8 NC_005178.1 + 15698 0.68 0.297088
Target:  5'- -uCGgCCUGGAcUGGACCAUcgagCCGCCGc -3'
miRNA:   3'- guGCaGGACCUcGCCUGGUA----GGCGGU- -5'
23067 3' -59.8 NC_005178.1 + 6878 0.68 0.282584
Target:  5'- -uCGgCCUGGGGC-GAgCGUCCGCCc -3'
miRNA:   3'- guGCaGGACCUCGcCUgGUAGGCGGu -5'
23067 3' -59.8 NC_005178.1 + 7777 0.68 0.275544
Target:  5'- --aGUCCUGGuGCGaGGCCAaCCguGCCGa -3'
miRNA:   3'- gugCAGGACCuCGC-CUGGUaGG--CGGU- -5'
23067 3' -59.8 NC_005178.1 + 30764 0.68 0.268646
Target:  5'- gACGcCUUGGAGCuGAaccaggaCAUCCGCCu -3'
miRNA:   3'- gUGCaGGACCUCGcCUg------GUAGGCGGu -5'
23067 3' -59.8 NC_005178.1 + 3116 0.68 0.261888
Target:  5'- uCAUGUCCgGGcGGCGGACCuUCggcaccagggCGCCAc -3'
miRNA:   3'- -GUGCAGGaCC-UCGCCUGGuAG----------GCGGU- -5'
23067 3' -59.8 NC_005178.1 + 28216 0.69 0.248787
Target:  5'- gCACGcUCCUG-AGCGGcGCCG-CCGCUAu -3'
miRNA:   3'- -GUGC-AGGACcUCGCC-UGGUaGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.