miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23067 5' -55.3 NC_005178.1 + 8981 0.66 0.613469
Target:  5'- cCCAGCgcacGGAagccGGGCCGAucCUGCUGGc -3'
miRNA:   3'- cGGUCG----CCUau--CCUGGUU--GACGACCu -5'
23067 5' -55.3 NC_005178.1 + 16991 0.66 0.600981
Target:  5'- gGCCGGCucaacggcacgcuGGAUcGGAUCGACUGaUGGc -3'
miRNA:   3'- -CGGUCG-------------CCUAuCCUGGUUGACgACCu -5'
23067 5' -55.3 NC_005178.1 + 28475 0.66 0.590788
Target:  5'- cGCCAuGCaGccAGGGCUuacuccgcuGCUGCUGGAc -3'
miRNA:   3'- -CGGU-CGcCuaUCCUGGu--------UGACGACCU- -5'
23067 5' -55.3 NC_005178.1 + 22867 0.66 0.579499
Target:  5'- aGCUGGCGGAUGGacgccucGCCGuACUGCUcGAc -3'
miRNA:   3'- -CGGUCGCCUAUCc------UGGU-UGACGAcCU- -5'
23067 5' -55.3 NC_005178.1 + 35463 0.66 0.568256
Target:  5'- gGCCAGCGcc-GGGGCCAGuuggccCUcGCUGGu -3'
miRNA:   3'- -CGGUCGCcuaUCCUGGUU------GA-CGACCu -5'
23067 5' -55.3 NC_005178.1 + 17321 0.66 0.561536
Target:  5'- cGCCggacGGCGGGgccgAGGucgcCCAGCUcggcagcccgcgccgGCUGGAa -3'
miRNA:   3'- -CGG----UCGCCUa---UCCu---GGUUGA---------------CGACCU- -5'
23067 5' -55.3 NC_005178.1 + 31769 0.66 0.557068
Target:  5'- uGCCGGCGacgaccuacaGggGGcGGCCAG-UGCUGGAg -3'
miRNA:   3'- -CGGUCGC----------CuaUC-CUGGUUgACGACCU- -5'
23067 5' -55.3 NC_005178.1 + 12917 0.67 0.534894
Target:  5'- gGCCGGUGGugggcuggAGGacguggcgcGCCAGgUGCUGGc -3'
miRNA:   3'- -CGGUCGCCua------UCC---------UGGUUgACGACCu -5'
23067 5' -55.3 NC_005178.1 + 9162 0.67 0.523922
Target:  5'- aGCUGGCGGAUgcGGGugCGAauuuuCUGCUcGAc -3'
miRNA:   3'- -CGGUCGCCUA--UCCugGUU-----GACGAcCU- -5'
23067 5' -55.3 NC_005178.1 + 5283 0.67 0.523922
Target:  5'- cGCCAcCGuucAGGGCCGGCgcgaGCUGGAa -3'
miRNA:   3'- -CGGUcGCcuaUCCUGGUUGa---CGACCU- -5'
23067 5' -55.3 NC_005178.1 + 36127 0.67 0.513038
Target:  5'- gGCUGGCGGGUgcAGGuggcgaacgagGCCAcgcCUGCUGGc -3'
miRNA:   3'- -CGGUCGCCUA--UCC-----------UGGUu--GACGACCu -5'
23067 5' -55.3 NC_005178.1 + 27701 0.67 0.503322
Target:  5'- -gCGGCGGcacguugacccuggAGGGCCAGCgcauccuguuguUGCUGGAg -3'
miRNA:   3'- cgGUCGCCua------------UCCUGGUUG------------ACGACCU- -5'
23067 5' -55.3 NC_005178.1 + 35394 0.67 0.491558
Target:  5'- aCCAGCG---AGGGCCAACUggccccggcGCUGGc -3'
miRNA:   3'- cGGUCGCcuaUCCUGGUUGA---------CGACCu -5'
23067 5' -55.3 NC_005178.1 + 22601 0.68 0.470502
Target:  5'- gGCCAGgGGc--GGuCCcuCUGCUGGGg -3'
miRNA:   3'- -CGGUCgCCuauCCuGGuuGACGACCU- -5'
23067 5' -55.3 NC_005178.1 + 8619 0.68 0.449916
Target:  5'- gGCCuGCGGcau-GACCAAUUGaCUGGGg -3'
miRNA:   3'- -CGGuCGCCuaucCUGGUUGAC-GACCU- -5'
23067 5' -55.3 NC_005178.1 + 12991 0.68 0.446871
Target:  5'- aGCCAuccagguagacGCGGAcaUcaagcccgccgugaAGGugCAGCUGCUGGc -3'
miRNA:   3'- -CGGU-----------CGCCU--A--------------UCCugGUUGACGACCu -5'
23067 5' -55.3 NC_005178.1 + 2844 0.68 0.445858
Target:  5'- uGCUGGCGGuugguuucgaccAGGGCCAGCUGCgucuccuggcGGAc -3'
miRNA:   3'- -CGGUCGCCua----------UCCUGGUUGACGa---------CCU- -5'
23067 5' -55.3 NC_005178.1 + 31507 0.69 0.419995
Target:  5'- cGCCAGCGGuuccuGGAgCA---GCUGGAu -3'
miRNA:   3'- -CGGUCGCCuau--CCUgGUugaCGACCU- -5'
23067 5' -55.3 NC_005178.1 + 28280 0.69 0.410292
Target:  5'- uGUCAGUGGGgu-GACCGgcGCUGCgGGAg -3'
miRNA:   3'- -CGGUCGCCUaucCUGGU--UGACGaCCU- -5'
23067 5' -55.3 NC_005178.1 + 35034 0.7 0.355107
Target:  5'- gGCCAGCGcGGccaagUAGGAcgcgcucacguCCAGgaGCUGGAg -3'
miRNA:   3'- -CGGUCGC-CU-----AUCCU-----------GGUUgaCGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.