miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23068 3' -56.3 NC_005178.1 + 8491 0.66 0.596796
Target:  5'- cCGugCCGCCCaucagGCGAa-GGUUGu -3'
miRNA:   3'- cGCugGGCGGGgaaa-UGCUggCCAAC- -5'
23068 3' -56.3 NC_005178.1 + 2262 0.66 0.590156
Target:  5'- -aGACCCgaGCCCCggccagaugcuUGGCCGGUa- -3'
miRNA:   3'- cgCUGGG--CGGGGaaau-------GCUGGCCAac -5'
23068 3' -56.3 NC_005178.1 + 27222 0.66 0.57472
Target:  5'- cGCGcUUCGCCCCUccGCGcCCGGc-- -3'
miRNA:   3'- -CGCuGGGCGGGGAaaUGCuGGCCaac -5'
23068 3' -56.3 NC_005178.1 + 20229 0.66 0.57472
Target:  5'- gGCGACCUcgGCCCCgc--CGuCCGGc-- -3'
miRNA:   3'- -CGCUGGG--CGGGGaaauGCuGGCCaac -5'
23068 3' -56.3 NC_005178.1 + 4925 0.66 0.56375
Target:  5'- aCGGCaCCGCUCg---GCGACCGGg-- -3'
miRNA:   3'- cGCUG-GGCGGGgaaaUGCUGGCCaac -5'
23068 3' -56.3 NC_005178.1 + 8662 0.67 0.488951
Target:  5'- -aGGCCUGCCCagccGCGACCaGGUcUGg -3'
miRNA:   3'- cgCUGGGCGGGgaaaUGCUGG-CCA-AC- -5'
23068 3' -56.3 NC_005178.1 + 3372 0.67 0.488951
Target:  5'- aGCGGCCCGCCagcucgccucguCCaUUcGCGugCGGg-- -3'
miRNA:   3'- -CGCUGGGCGG------------GG-AAaUGCugGCCaac -5'
23068 3' -56.3 NC_005178.1 + 26961 0.68 0.468416
Target:  5'- uGCgGugCCGgCUCgcu-CGGCCGGUUGa -3'
miRNA:   3'- -CG-CugGGCgGGGaaauGCUGGCCAAC- -5'
23068 3' -56.3 NC_005178.1 + 13115 0.68 0.458316
Target:  5'- cCGGCgCGCCgCCUU--CGGCCaGGUUGa -3'
miRNA:   3'- cGCUGgGCGG-GGAAauGCUGG-CCAAC- -5'
23068 3' -56.3 NC_005178.1 + 14187 0.69 0.41913
Target:  5'- cCGACugCCGCCCUggUGCGAcgccCCGGUg- -3'
miRNA:   3'- cGCUG--GGCGGGGaaAUGCU----GGCCAac -5'
23068 3' -56.3 NC_005178.1 + 33701 0.71 0.31471
Target:  5'- cGCGGCaaGCUgCUgUGCGGCCGGUc- -3'
miRNA:   3'- -CGCUGggCGGgGAaAUGCUGGCCAac -5'
23068 3' -56.3 NC_005178.1 + 3023 0.72 0.277389
Target:  5'- aCGAgCgCCGCCCCUgcgacgcaGCGACCGcGUUGu -3'
miRNA:   3'- cGCU-G-GGCGGGGAaa------UGCUGGC-CAAC- -5'
23068 3' -56.3 NC_005178.1 + 1584 1.11 0.000419
Target:  5'- uGCGACCCGCCCCUUUACGACCGGUUGg -3'
miRNA:   3'- -CGCUGGGCGGGGAAAUGCUGGCCAAC- -5'
23068 3' -56.3 NC_005178.1 + 35110 0.66 0.56375
Target:  5'- cCGAgCUGCCgCUg-GCGGCCGGUc- -3'
miRNA:   3'- cGCUgGGCGGgGAaaUGCUGGCCAac -5'
23068 3' -56.3 NC_005178.1 + 11978 0.66 0.552837
Target:  5'- cCGGCCUaGCCCUggUGCGgGCUGGUa- -3'
miRNA:   3'- cGCUGGG-CGGGGaaAUGC-UGGCCAac -5'
23068 3' -56.3 NC_005178.1 + 33896 0.66 0.543069
Target:  5'- gGCGuCCUGCCgcgCCUggcggcgaugcucgGCGGCCGGUg- -3'
miRNA:   3'- -CGCuGGGCGG---GGAaa------------UGCUGGCCAac -5'
23068 3' -56.3 NC_005178.1 + 21604 0.67 0.509897
Target:  5'- --uACUCGCCCCaggcgaagAUGGCCGGUUa -3'
miRNA:   3'- cgcUGGGCGGGGaaa-----UGCUGGCCAAc -5'
23068 3' -56.3 NC_005178.1 + 23473 0.68 0.478629
Target:  5'- cGCGaaGCCgGCCCgCUgcuCGGCCGGcUGc -3'
miRNA:   3'- -CGC--UGGgCGGG-GAaauGCUGGCCaAC- -5'
23068 3' -56.3 NC_005178.1 + 3377 0.69 0.409654
Target:  5'- aCGGCCgGCCCUUc--CGGCCGGa-- -3'
miRNA:   3'- cGCUGGgCGGGGAaauGCUGGCCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.