miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23068 5' -53.7 NC_005178.1 + 36485 0.66 0.681354
Target:  5'- -cCAcUCCCAGCGCAuCAc-CGGGUCu -3'
miRNA:   3'- caGU-AGGGUCGCGUuGUacGCCUAGu -5'
23068 5' -53.7 NC_005178.1 + 30359 0.66 0.669861
Target:  5'- cGUC-UCCCGGCGCGuCGUcggccccggucGCGGAa-- -3'
miRNA:   3'- -CAGuAGGGUCGCGUuGUA-----------CGCCUagu -5'
23068 5' -53.7 NC_005178.1 + 6228 0.66 0.662946
Target:  5'- cUCGaacUCCCGGCGCGGCGccagGCgcauagcccggcgcuGGGUCAc -3'
miRNA:   3'- cAGU---AGGGUCGCGUUGUa---CG---------------CCUAGU- -5'
23068 5' -53.7 NC_005178.1 + 26172 0.66 0.635196
Target:  5'- aUCAUCaUCGGCGCGGCGguggccgcUGCGGGc-- -3'
miRNA:   3'- cAGUAG-GGUCGCGUUGU--------ACGCCUagu -5'
23068 5' -53.7 NC_005178.1 + 34710 0.67 0.628249
Target:  5'- uUCGaCCCGGCGCGGCAucccugaaaccgucgUuCGGGUCGg -3'
miRNA:   3'- cAGUaGGGUCGCGUUGU---------------AcGCCUAGU- -5'
23068 5' -53.7 NC_005178.1 + 20036 0.67 0.623618
Target:  5'- gGUCGUCCCAGCGgAACAccuUGCc----- -3'
miRNA:   3'- -CAGUAGGGUCGCgUUGU---ACGccuagu -5'
23068 5' -53.7 NC_005178.1 + 5981 0.67 0.599346
Target:  5'- aGUCGUUCCGGgGCGcugccccaggcugGCGUGuCGGAUa- -3'
miRNA:   3'- -CAGUAGGGUCgCGU-------------UGUAC-GCCUAgu -5'
23068 5' -53.7 NC_005178.1 + 17256 0.68 0.5547
Target:  5'- ---cUUCCAGCGCAACcUGCGGccgAUCc -3'
miRNA:   3'- caguAGGGUCGCGUUGuACGCC---UAGu -5'
23068 5' -53.7 NC_005178.1 + 17978 0.7 0.425665
Target:  5'- -cCGUUUCGGCGCGuguagcgcguuuGCggGCGGAUCAg -3'
miRNA:   3'- caGUAGGGUCGCGU------------UGuaCGCCUAGU- -5'
23068 5' -53.7 NC_005178.1 + 27973 0.72 0.308118
Target:  5'- -aCcgCCCAGCGCAGC--GCGGcgCAg -3'
miRNA:   3'- caGuaGGGUCGCGUUGuaCGCCuaGU- -5'
23068 5' -53.7 NC_005178.1 + 36002 0.78 0.125886
Target:  5'- cGUCAUCgCCggacaGGCGCGACAUGCGGG-CGg -3'
miRNA:   3'- -CAGUAG-GG-----UCGCGUUGUACGCCUaGU- -5'
23068 5' -53.7 NC_005178.1 + 1619 1.09 0.000747
Target:  5'- aGUCAUCCCAGCGCAACAUGCGGAUCAg -3'
miRNA:   3'- -CAGUAGGGUCGCGUUGUACGCCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.