miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23069 3' -54.3 NC_005178.1 + 28261 0.66 0.677797
Target:  5'- cGCUGGCcgccgccaAUGGugucAGUGGGGUGA-CCGGc -3'
miRNA:   3'- -CGGCCG--------UACU----UUACCUCGCUaGGCCa -5'
23069 3' -54.3 NC_005178.1 + 10328 0.66 0.666472
Target:  5'- gGCCgGGCGcGGAggGGcgaAGCGcgCCGGg -3'
miRNA:   3'- -CGG-CCGUaCUUuaCC---UCGCuaGGCCa -5'
23069 3' -54.3 NC_005178.1 + 32928 0.66 0.655112
Target:  5'- cGCCGGCAUGccGAUGGcuGGUuuaCCGGg -3'
miRNA:   3'- -CGGCCGUACu-UUACC--UCGcuaGGCCa -5'
23069 3' -54.3 NC_005178.1 + 26467 0.67 0.60956
Target:  5'- uGCCGGCc-GAGGUGGAuGCGGgaucaggcaUuuGGUg -3'
miRNA:   3'- -CGGCCGuaCUUUACCU-CGCU---------AggCCA- -5'
23069 3' -54.3 NC_005178.1 + 13870 0.67 0.575576
Target:  5'- uGCCGGCAUG----GGuGUGAUUgGGUu -3'
miRNA:   3'- -CGGCCGUACuuuaCCuCGCUAGgCCA- -5'
23069 3' -54.3 NC_005178.1 + 14641 0.68 0.553154
Target:  5'- aGCgGGCGUGcAGGUGGAGauCGAucUCCGcGUc -3'
miRNA:   3'- -CGgCCGUAC-UUUACCUC--GCU--AGGC-CA- -5'
23069 3' -54.3 NC_005178.1 + 10452 0.68 0.520042
Target:  5'- cGCUGGUAc--GGUGGcGCGAUCUGGa -3'
miRNA:   3'- -CGGCCGUacuUUACCuCGCUAGGCCa -5'
23069 3' -54.3 NC_005178.1 + 25360 0.69 0.477178
Target:  5'- aGCCaGGC-UGGccgGGAGCuGUCCGGUu -3'
miRNA:   3'- -CGG-CCGuACUuuaCCUCGcUAGGCCA- -5'
23069 3' -54.3 NC_005178.1 + 16331 0.69 0.466733
Target:  5'- gGCCGGCcgG----GGAGCGGguUUCGGUg -3'
miRNA:   3'- -CGGCCGuaCuuuaCCUCGCU--AGGCCA- -5'
23069 3' -54.3 NC_005178.1 + 33074 0.73 0.265348
Target:  5'- uGCCGGUAgcgcUGGGcgGGAGCGGUCggcaGGg -3'
miRNA:   3'- -CGGCCGU----ACUUuaCCUCGCUAGg---CCa -5'
23069 3' -54.3 NC_005178.1 + 826 1.09 0.000734
Target:  5'- cGCCGGCAUGAAAUGGAGCGAUCCGGUu -3'
miRNA:   3'- -CGGCCGUACUUUACCUCGCUAGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.