miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23070 3' -54.8 NC_005178.1 + 28125 0.66 0.634019
Target:  5'- uAGGcCGGGGCGGUUucGCUcagUGgaCGGUGCg -3'
miRNA:   3'- -UCU-GUCUCGCCAGu-CGA---ACg-GCUACG- -5'
23070 3' -54.8 NC_005178.1 + 13511 0.66 0.599751
Target:  5'- uGACGGuGGCGGUC---UUGCCGAuagggaagcUGCg -3'
miRNA:   3'- uCUGUC-UCGCCAGucgAACGGCU---------ACG- -5'
23070 3' -54.8 NC_005178.1 + 13032 0.66 0.599751
Target:  5'- -uGCAGcuGCuGGcCAGCcugGCCGAUGCc -3'
miRNA:   3'- ucUGUCu-CG-CCaGUCGaa-CGGCUACG- -5'
23070 3' -54.8 NC_005178.1 + 17180 0.66 0.588374
Target:  5'- cGGcuuCAGGGCGGUCAGg--GCCGcaaugGCc -3'
miRNA:   3'- -UCu--GUCUCGCCAGUCgaaCGGCua---CG- -5'
23070 3' -54.8 NC_005178.1 + 18137 0.66 0.588374
Target:  5'- gAGGCcGAGCaGcUCGGCUgcgcgccguugGCUGAUGCc -3'
miRNA:   3'- -UCUGuCUCGcC-AGUCGAa----------CGGCUACG- -5'
23070 3' -54.8 NC_005178.1 + 23227 0.66 0.584968
Target:  5'- aGGACGGuGCGGgccgugUCGaaggccgcgcauccGCUUGCCGGaGCc -3'
miRNA:   3'- -UCUGUCuCGCC------AGU--------------CGAACGGCUaCG- -5'
23070 3' -54.8 NC_005178.1 + 16670 0.66 0.577037
Target:  5'- uGGCGaGGCGGUCcugGGCgaucagGCCGgcGCa -3'
miRNA:   3'- uCUGUcUCGCCAG---UCGaa----CGGCuaCG- -5'
23070 3' -54.8 NC_005178.1 + 26199 0.67 0.543355
Target:  5'- aGGAgCGGAGCGGaaacgaaCAGCagGCCGAccGCu -3'
miRNA:   3'- -UCU-GUCUCGCCa------GUCGaaCGGCUa-CG- -5'
23070 3' -54.8 NC_005178.1 + 33804 0.67 0.543355
Target:  5'- cGAUGGcccGGCGcGUCAGCUUGaaGGUGg -3'
miRNA:   3'- uCUGUC---UCGC-CAGUCGAACggCUACg -5'
23070 3' -54.8 NC_005178.1 + 8151 0.67 0.540021
Target:  5'- cGGCGGGaucGCGGagauagCAGCUgcgcucguaggggcUGCUGAUGCc -3'
miRNA:   3'- uCUGUCU---CGCCa-----GUCGA--------------ACGGCUACG- -5'
23070 3' -54.8 NC_005178.1 + 26944 0.67 0.532266
Target:  5'- uGGACAGGGUGGauugCuGCggUGCCGGcucGCu -3'
miRNA:   3'- -UCUGUCUCGCCa---GuCGa-ACGGCUa--CG- -5'
23070 3' -54.8 NC_005178.1 + 30270 0.67 0.532266
Target:  5'- cGGuACAGcGGCGGcggCAGCgUGCUGcgGCu -3'
miRNA:   3'- -UC-UGUC-UCGCCa--GUCGaACGGCuaCG- -5'
23070 3' -54.8 NC_005178.1 + 32917 0.68 0.510344
Target:  5'- -aGCGGcGUGGUCgccGGCaUGCCGAUGg -3'
miRNA:   3'- ucUGUCuCGCCAG---UCGaACGGCUACg -5'
23070 3' -54.8 NC_005178.1 + 30558 0.68 0.510344
Target:  5'- cGACGGguAGCGGUUGGCgagGauGGUGCu -3'
miRNA:   3'- uCUGUC--UCGCCAGUCGaa-CggCUACG- -5'
23070 3' -54.8 NC_005178.1 + 26893 0.68 0.510344
Target:  5'- gAGACAGGGuCGGcgCGGagacgccgGCCGggGCg -3'
miRNA:   3'- -UCUGUCUC-GCCa-GUCgaa-----CGGCuaCG- -5'
23070 3' -54.8 NC_005178.1 + 33086 0.68 0.488807
Target:  5'- uGGGCgGGAGCGGUCGGCagggUGaaGAccuggGCg -3'
miRNA:   3'- -UCUG-UCUCGCCAGUCGa---ACggCUa----CG- -5'
23070 3' -54.8 NC_005178.1 + 34683 0.68 0.478199
Target:  5'- -aAUGGAGCGuuucCGGCUguaGCCGGUGCg -3'
miRNA:   3'- ucUGUCUCGCca--GUCGAa--CGGCUACG- -5'
23070 3' -54.8 NC_005178.1 + 3570 0.69 0.447083
Target:  5'- cGACGaGGCGGUCGGCcuuauggGCCGccuggGCa -3'
miRNA:   3'- uCUGUcUCGCCAGUCGaa-----CGGCua---CG- -5'
23070 3' -54.8 NC_005178.1 + 5954 0.69 0.417126
Target:  5'- uGGACGGGGCGGacCAGgUccagGCCGGcgGCg -3'
miRNA:   3'- -UCUGUCUCGCCa-GUCgAa---CGGCUa-CG- -5'
23070 3' -54.8 NC_005178.1 + 22865 0.69 0.407416
Target:  5'- cGAUccGGCGGUCguggcccaGGCUaucGCCGAUGCg -3'
miRNA:   3'- uCUGucUCGCCAG--------UCGAa--CGGCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.